RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NLGN4XQ8N0W4 816 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 DPP10Q8N608 796 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SLC47A1Q96FL8 570 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SCLYQ96I15 445 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 BBS2Q9BXC9 721 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 HACD3Q9P035 362 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ZNF840PA6NDX5 716 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 CXCR6O00574 342 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 STX16O14662 325 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PER2O15055 1255 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 JRKO75564 520 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 EPOP01588 193 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 RHOCP08134 193 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 DAPP51397 102 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ADRM1Q16186 407 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ZNF829Q3KNS6 432 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 CCSMST1Q4G0I0 132 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 NEK5Q6P3R8 708 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ANKS3Q6ZW76 656 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 FRA10AC1Q70Z53 315 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 Q8N9G6 341 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 TNIP2Q8NFZ5 429 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ADAMTS19Q8TE59 1207 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 KCNJ9Q92806 393 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 OR52E6Q96RD3 313 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 BDH2Q9BUT1 245 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ATG10Q9H0Y0 220 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SEPT3Q9UH03 358 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 VPS51Q9UID3 782 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PTBP2Q9UKA9 531 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 PKP3Q9Y446 797 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 A0A096LPI6 279 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 TRBV5-3A0A0A0MS03 114 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 C2orf81A6NN90 581 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ZNF821O75541 412 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 OCM2P0CE71 109 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 OCMP0CE72 109 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 C21orf33P30042 268 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 SLC19A1P41440 591 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 SLC13A2Q13183 592 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 CHRNA6Q15825 494 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 INAVAQ3KP66 663 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 OR4F3Q6IEY1 312 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 SPATA19Q7Z5L4 167 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 B3GNT8Q7Z7M8 397 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 TMEM150AQ86TG1 271 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 IFNL1Q8IU54 200 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 GPR26Q8NDV2 337 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 QPCTLQ9NXS2 382 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 TMPRSS11EQ9UL52 423 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 LOC100130705A0A1B0GUX0 176 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 BPIP17213 487 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 CD22P20273 847 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ITPKAP23677 461 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 TP53BP2Q13625 1128 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 SYT16Q17RD7 645 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ZNF362Q5T0B9 420 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 THAP5Q7Z6K1 395 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 LRRC49Q8IUZ0 686 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 C2orf69Q8N8R5 385 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 PIH1D2Q8WWB5 315 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ITFG2Q969R8 447 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ASB8Q9H765 288 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 CHCHD3Q9NX63 227 aaKnown RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 ZIM2Q9NZV7 527 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 PDE10AQ9Y233 779 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ARIH1Q9Y4X5 557 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 NPIPB15A6NHN6 443 aaPredicted RBP10.44□□□□□ -0.74
USP28-201ENST00000003302 KDELR3O43731 214 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 SSX4O60224 188 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ABCB7O75027 752 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ZNF682O95780 498 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 CSKP41240 450 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 VAC14Q08AM6 782 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 PWP1Q13610 501 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 GTF2H3Q13889 308 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 LRRC66Q68CR7 880 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 TXNDC8Q6A555 127 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 PRMT9Q6P2P2 845 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 SLC24A5Q71RS6 500 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 NECAB2Q7Z6G3 386 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 CDC26Q8NHZ8 85 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 MTG2Q9H4K7 406 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 RUBCNLQ9H714 662 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 DHRS7Q9Y394 339 aa10.44□□□□□ -0.74
USP28-201ENST00000003302 ANTXRLA6NF34 631 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 CREG1O75629 220 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 ETHE1O95571 254 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 FADS2O95864 444 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 HPCAL1P37235 193 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 NKX2-5P52952 324 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 CHRNB3Q05901 458 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 DBPQ10586 325 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 PLD1Q13393 1074 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 FUT10Q6P4F1 479 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 TSEN54Q7Z6J9 526 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 GPR63Q9BZJ6 419 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 CD320Q9NPF0 282 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 PLXNB3Q9ULL4 1909 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 TMEM229AB2RXF0 380 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms