RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 AK4P27144 223 aaPredicted RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 EPHA3P29320 983 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 ERVPABLB-1P60509 514 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 PTCHD3Q3KNS1 767 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 ABI3BPQ7Z7G0 1075 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 CAMKK1Q8N5S9 505 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 RILPQ96NA2 401 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 FOPNLQ96NB1 174 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 IPPKQ9H8X2 491 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 PLAGL1Q9UM63 463 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 TNPO3Q9Y5L0 923 aaKnown RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 STK16O75716 305 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 CATP04040 527 aaKnown RBP19.58■□□□□ 0.73
CLN3-250ENST00000636839 EPORP19235 508 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 THOP1P52888 689 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 CDKL1Q00532 357 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 PRKG2Q13237 762 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 ALG11Q2TAA5 492 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 TCHHL1Q5QJ38 904 aaPredicted RBP19.58■□□□□ 0.73
CLN3-250ENST00000636839 LETMD1Q6P1Q0 360 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 PDZD3Q86UT5 571 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 UBTD2Q8WUN7 234 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 TMEM168Q9H0V1 697 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 MYLK2Q9H1R3 596 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 TCEAL2Q9H3H9 227 aaPredicted RBP19.58■□□□□ 0.73
CLN3-250ENST00000636839 RMI1Q9H9A7 625 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 PRDM8Q9NQV8 689 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 OPTCQ9UBM4 332 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 KLF15Q9UIH9 416 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 ASF1AQ9Y294 204 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 DNAJC15Q9Y5T4 150 aa19.58■□□□□ 0.73
CLN3-250ENST00000636839 PRAMEF33A0A0G2JMD5 474 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 AXIN1O15169 862 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 OR4F21O95013 312 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 EML2O95834 649 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 RPL6Q02878 288 aaKnown RBP19.58■□□□□ 0.72
CLN3-250ENST00000636839 BTKQ06187 659 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 SIGLEC14Q08ET2 396 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 CLCA4Q14CN2 919 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 CCT6BQ92526 530 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 TFGQ92734 400 aaPredicted RBP19.58■□□□□ 0.72
CLN3-250ENST00000636839 DNAJC28Q9NX36 388 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 STOX2Q9P2F5 926 aaPredicted RBP19.58■□□□□ 0.72
CLN3-250ENST00000636839 SLC22A14Q9Y267 594 aa19.58■□□□□ 0.72
CLN3-250ENST00000636839 SDK1Q7Z5N4 2213 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 TECTAO75443 2155 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 PRR19A6NJB7 356 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 METTL12A8MUP2 240 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 ANKRD65E5RJM6 399 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 HTR1BP28222 390 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 IMPA1P29218 277 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 GGT5P36269 586 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 ARL1P40616 181 aaPredicted RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 SLC6A12P48065 614 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 AP1S2P56377 157 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 SRP54P61011 504 aaKnown RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 PLOD1Q02809 727 aaPredicted RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 RPA4Q13156 261 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 HID1Q8IV36 788 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 TMEFF1Q8IYR6 380 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 SKA1Q96BD8 255 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 ERP27Q96DN0 273 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 C3orf30Q96M34 536 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 IL17FQ96PD4 163 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 OR2M4Q96R27 311 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 INSM2Q96T92 566 aaPredicted RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 TIMM29Q9BSF4 260 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 NMUR2Q9GZQ4 415 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 TUBB1Q9H4B7 451 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 INTS7Q9NVH2 962 aaKnown RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 SCHIP1Q9P0W5 487 aaPredicted RBP19.57■□□□□ 0.72
CLN3-250ENST00000636839 ARMCX1Q9P291 453 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 KLQ9UEF7 1012 aa19.57■□□□□ 0.72
CLN3-250ENST00000636839 OR52A4PA6NMU1 304 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 K7EPI3 171 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 AZIN1O14977 448 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 WDR47O94967 919 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 RASGRP1O95267 797 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 CTBSQ01459 385 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 DMPKQ09013 629 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 GRB7Q14451 532 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 AGTRAPQ6RW13 159 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 SCIMPQ6UWF3 145 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 C2orf73Q8N5S3 287 aaPredicted RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 CDYL2Q8N8U2 506 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 EDAQ92838 391 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 FBXL8Q96CD0 374 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 CCDC138Q96M89 665 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 LRRC37BQ96QE4 947 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 AASDHPPTQ9NRN7 309 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 SPATA6Q9NWH7 488 aaPredicted RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 BTRCQ9Y297 605 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 ATP6AP2A0A1C7CYW4 349 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 PABPN1LA6NDY0 278 aaKnown RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 PRAMEF4O60810 478 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 ATP6AP2O75787 350 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 ESRRBO95718 433 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 MLYCDO95822 493 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 WNT1P04628 370 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms