RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CHI3L1P36222 383 aaPredicted RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 KIR3DL1P43629 444 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SEMG2Q02383 582 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 TBRG1Q3YBR2 411 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 DHRS4L2Q6PKH6 230 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ZNF517Q6ZMY9 492 aaPredicted RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 NEK10Q6ZWH5 1172 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 RRM2BQ7LG56 351 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 CLDN19Q8N6F1 224 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ARRDC4Q8NCT1 418 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ZNF641Q96N77 438 aaPredicted RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 TRNT1Q96Q11 434 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 PHOX2BQ99453 314 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 CIPCQ9C0C6 399 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 INTS6Q9UL03 887 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 B3GNT3Q9Y2A9 372 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 GPR45Q9Y5Y3 372 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 A0A0U1RQS6 177 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PIPSLA2A3N6 862 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 IFRD1O00458 451 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 PLSCR1O15162 318 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PSIP1O75475 530 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 GSTM1P09488 218 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 CDH12P55289 794 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 ARHGAP1Q07960 439 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 BTG3Q14201 252 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 MFSD10Q14728 455 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 HIST2H2ACQ16777 129 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 ADPRMQ3LIE5 342 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 RFTN2Q52LD8 501 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 SPOUT1Q5T280 376 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 LINGO4Q6UY18 593 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 PTCHD4Q6ZW05 846 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 USP43Q70EL4 1123 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PYCR2Q96C36 320 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MED8Q96G25 268 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 CDK5RAP1Q96SZ6 601 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 CRISPLD1Q9H336 500 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 FAM124BQ9H5Z6 455 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 AASDHPPTQ9NRN7 309 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PRKAB1Q9Y478 270 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 NHSQ6T4R5 1651 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 A0A1W2PQ72 361 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 FAM155AB1AL88 458 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 FXYD1O00168 92 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MYL12BO14950 172 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 KPNA5O15131 536 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PLOD3O60568 738 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 AP2A2O94973 939 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 ITPKAP23677 461 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 GADD45AP24522 165 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 RRM2P31350 389 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 THPOP40225 353 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 RCAN2Q14206 197 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 NCF4Q15080 339 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PON2Q15165 354 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SPDYE7PQ495Y7 208 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 TIGD5Q53EQ6 642 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MMAAQ8IVH4 418 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 TCAIMQ8N3R3 496 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MTMR14Q8NCE2 650 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 HMGCLL1Q8TB92 370 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 KCTD13Q8WZ19 329 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 TMEM203Q969S6 136 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PYURFQ96I23 114 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 ZNF599Q96NL3 588 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SLC2A13Q96QE2 648 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 IL4I1Q96RQ9 567 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SLC13A4Q9UKG4 626 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PCDHB14Q9Y5E9 798 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 HS3ST4Q9Y661 456 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MEIS3P2A8K0S8 358 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 TNFRSF11BO00300 401 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SLC28A1O00337 649 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PIRO00625 290 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SLC25A14O95258 325 aaPredicted RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 MATN4O95460 622 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 GLUD1P00367 558 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 CCT3P49368 545 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 CDC42P60953 191 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 IRF8Q02556 426 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 ALFQ53S48 1182 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PPP2R2DQ66LE6 453 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 SDE2Q6IQ49 451 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 DCP2Q8IU60 420 aaKnown RBP10.82□□□□□ -0.68
CLN3-244ENST00000636147 CARNMT1Q8N4J0 409 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 GOLM1Q8NBJ4 401 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 ATAD1Q8NBU5 361 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 OR6Q1Q8NGQ2 317 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PPTC7Q8NI37 304 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 CDCA5Q96FF9 252 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 MMP27Q9H306 513 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PRELID1Q9Y255 219 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PCDHA9Q9Y5H5 950 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 PHLPP1O60346 1717 aa10.82□□□□□ -0.68
CLN3-244ENST00000636147 TNRC6CQ9HCJ0 1690 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 M0QX08 132 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 FPGTO14772 594 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ARNTP27540 789 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms