RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GTDC1Q4AE62 458 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PRAMEF9Q5VWM5 478 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 DLEU7Q6UYE1 221 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 CACUL1Q86Y37 369 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 CBR4Q8N4T8 237 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 TBCDQ9BTW9 1192 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ACPTQ9BZG2 426 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 IKZF5Q9H5V7 419 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 WBP1LQ9NX94 342 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PDP2Q9P2J9 529 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 TMCO1Q9UM00 188 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 DLGAP4Q9Y2H0 992 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PPIL1Q9Y3C6 166 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 IRAK3Q9Y616 596 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 MANBAO00462 879 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 RGS14O43566 566 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 DENRO43583 198 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 CLIC3O95833 236 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 GSNP06396 782 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 HIST1H2AGP0C0S8 130 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 HIST1H2ADP20671 130 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PSMA4P25789 261 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 SLC6A11P48066 632 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 POLE2P56282 527 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 FPGSQ05932 587 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 DHCR24Q15392 516 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 FAM109BQ6ICB4 259 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 PRMT9Q6P2P2 845 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 SELENOMQ8WWX9 145 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 AURKBQ96GD4 344 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 HIST1H2AHQ96KK5 128 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 EGLN2Q96KS0 407 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 TSSK3Q96PN8 268 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 HIST1H2AJQ99878 128 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 H2AFJQ9BTM1 129 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 EFHD1Q9BUP0 239 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 TRIM54Q9BYV2 358 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 HEBP1Q9NRV9 189 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 SLC6A13Q9NSD5 602 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 CCM2LQ9NUG4 571 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 PKD2L2Q9NZM6 624 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ACTR3BQ9P1U1 418 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PRKAG2Q9UGJ0 569 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 BLOC1S6Q9UL45 172 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 LZTS1Q9Y250 596 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 KANSL1LA0AUZ9 987 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 LINC01553A4QN01 128 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 TSPAN6O43657 245 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 CLDN9O95484 217 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 C1QCP02747 245 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 HRH2P25021 359 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 TACR1P25103 407 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 NNMTP40261 264 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 GNPDA1P46926 289 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 DDX39BQ13838 428 aaKnown RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 ACOX1Q15067 660 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 PYCR3Q53H96 274 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 PHACTR4Q8IZ21 702 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 ADGRG5Q8IZF4 528 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 ST13P4Q8IZP2 240 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 DRAXINQ8NBI3 349 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 SPDYE1Q8NFV5 336 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 ASB11Q8WXH4 323 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 NXPE3Q969Y0 559 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 THUMPD3Q9BV44 507 aaKnown RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 SLC32A1Q9H598 525 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 PARVBQ9HBI1 364 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 LRTM1Q9HBL6 345 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 C16orf96A6NNT2 1141 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 SGTAO43765 313 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 GNAO1P09471 354 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 EN2P19622 333 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 MSH3P20585 1137 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 VARSP26640 1264 aaKnown RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 EPHA5P54756 1037 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 TSTA3Q13630 321 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 ADNP2Q6IQ32 1131 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 FBXO46Q6PJ61 603 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 ADGRD2Q7Z7M1 963 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 HID1Q8IV36 788 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 GPR65Q8IYL9 337 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 MARVELD2Q8N4S9 558 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 CATSPER1Q8NEC5 780 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 PPP3R2Q96LZ3 170 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 SLX1AQ9BQ83 275 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 CENPKQ9BS16 269 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 DPY30Q9C005 99 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 CEP44Q9C0F1 390 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 SOX17Q9H6I2 414 aaPredicted RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 DUS2Q9NX74 493 aaKnown RBP10.37□□□□□ -0.75
CUX1-221ENST00000622516 RAB26Q9ULW5 256 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 OAZ3Q9UMX2 235 aa10.37□□□□□ -0.75
CUX1-221ENST00000622516 PRRT4C9JH25 899 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 K7ESM1 405 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 EBLN1P0CF75 366 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 IL10P22301 178 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 PDHA2P29803 388 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 HALP42357 657 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 DGKGP49619 791 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 NAA20P61599 178 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms