RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DERL2Q9GZP9 239 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 TBK1Q9UHD2 729 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 LGALS13Q9UHV8 139 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 IKZF3Q9UKT9 509 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 PCDHGA10Q9Y5H3 936 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 ASXL3Q9C0F0 2248 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 A0A087X1B8 175 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 A0A096LPK6 155 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 CCDC166P0CW27 439 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 CEACAM1P13688 526 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 GMPRP36959 345 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 CCNFP41002 786 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 BDKRB1P46663 353 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 EPHA4P54764 986 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 ILKQ13418 452 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 BIRC2Q13490 618 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 GRB7Q14451 532 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 KRT33BQ14525 404 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 TAF1BQ53T94 588 aaPredicted RBP19.17■□□□□ 0.66
UPF3A-211ENST00000618700 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.17■□□□□ 0.66
UPF3A-211ENST00000618700 PPM1JQ5JR12 505 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 LRIG3Q6UXM1 1119 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 SPRED1Q7Z699 444 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 CENPLQ8N0S6 344 aaPredicted RBP19.17■□□□□ 0.66
UPF3A-211ENST00000618700 ZIM3Q96PE6 472 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 CCDC3Q9BQI4 270 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 POLG2Q9UHN1 485 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 ACOT9Q9Y305 439 aa19.17■□□□□ 0.66
UPF3A-211ENST00000618700 RP1P56715 2156 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 SPTBN4Q9H254 2564 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 UQCRHLA0A096LP55 91 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 SLC16A5O15375 505 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 DKK1O94907 266 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 CATP04040 527 aaKnown RBP19.16■□□□□ 0.66
UPF3A-211ENST00000618700 C8GP07360 202 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 UQCRHP07919 91 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 TPBGLP0DKB5 382 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 IRF9Q00978 393 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 DLG1Q12959 904 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 PRKG2Q13237 762 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 TBC1D1Q86TI0 1168 aaPredicted RBP19.16■□□□□ 0.66
UPF3A-211ENST00000618700 CYP4X1Q8N118 509 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 SPATA6LQ8N4H0 392 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 OR52E1Q8NGJ3 308 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 DLG3Q92796 817 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 SLC38A3Q99624 504 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 MENTQ9BUN1 341 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 TBC1D10AQ9BXI6 508 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 TFB2MQ9H5Q4 396 aaKnown RBP19.16■□□□□ 0.66
UPF3A-211ENST00000618700 IGSF5Q9NSI5 407 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 TLK1Q9UKI8 766 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 ADAMTS6Q9UKP5 1117 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 PCDHGA1Q9Y5H4 931 aa19.16■□□□□ 0.66
UPF3A-211ENST00000618700 CNOT1A5YKK6 2376 aaKnown RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 IGHV1OR21-1A0A087WYE8 117 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 MYO1CO00159 1063 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 BTN3A1O00481 513 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 GIPC1O14908 333 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 RFPL3O75679 317 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 MPOP05164 745 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 CD1DP15813 335 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 NOVA1P51513 510 aaKnown RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 ATP6V0D1P61421 351 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 CSHL1Q14406 222 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 CASP8Q14790 479 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 PPP1R3AQ16821 1122 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 CCSMST1Q4G0I0 132 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 SBSNQ6UWP8 590 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 UBE2R2Q712K3 238 aaPredicted RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 JPH3Q8WXH2 748 aaPredicted RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 SLC12A9Q9BXP2 914 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 KCNK4Q9NYG8 393 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 NOVA2Q9UNW9 492 aaKnown RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 ICKQ9UPZ9 632 aa19.15■□□□□ 0.66
UPF3A-211ENST00000618700 TDRKHQ9Y2W6 561 aaKnown RBP19.15■□□□□ 0.66
UPF3A-211ENST00000618700 SPAARA0A1B0GVQ0 90 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 TLDC2A0PJX2 215 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 FAM221BA6H8Z2 402 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 NPEPPSL1A6NEC2 478 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 CDC7O00311 574 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 B4GAT1O43505 415 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 ZBTB14O43829 449 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 LTA4HP09960 611 aaKnown RBP19.14■□□□□ 0.65
UPF3A-211ENST00000618700 PKLRP30613 574 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 OR1D5P58170 312 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 GPLD1P80108 840 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 PLCL1Q15111 1095 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 PHKG1Q16816 387 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 KRT71Q3SY84 523 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 CLEC14AQ86T13 490 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 ADAMTSL2Q86TH1 951 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 MAGEC3Q8TD91 643 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 ACMSDQ8TDX5 336 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 KCTD4Q8WVF5 259 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 ZDHHC16Q969W1 377 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 RAD51AP1Q96B01 352 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 CABS1Q96KC9 395 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 NRTNQ99748 197 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 TWSG1Q9GZX9 223 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 VPS11Q9H270 941 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms