RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 COL6A1P12109 1028 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 OCA2Q04671 838 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 DPY19L3Q6ZPD9 716 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 CMTR2Q8IYT2 770 aaKnown RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 SNX19Q92543 992 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 TRIM43Q96BQ3 446 aaPredicted RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 ATOH8Q96SQ7 321 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 RAD21L1Q9H4I0 556 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 TCRBV3S1A0A5B6 114 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 NPIPB15A6NHN6 443 aaPredicted RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 CLPXO76031 633 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 ABLIM3O94929 683 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 GSNP06396 782 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 CAPN3P20807 821 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 ITPKAP23677 461 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 NKX3-2P78367 333 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 CYP51A1Q16850 503 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 SAMD4BQ5PRF9 694 aaKnown RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 FUNDC1Q8IVP5 155 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 ADAMTS19Q8TE59 1207 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 TRUB1Q8WWH5 349 aaKnown RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 TTLL2Q9BWV7 592 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 IPPKQ9H8X2 491 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 DYRK4Q9NR20 520 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 KIAA1522Q9P206 1035 aaPredicted RBP14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 LHX3Q9UBR4 397 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 NDUFAF1Q9Y375 327 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 LEFTY2O00292 366 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 HLA-FP30511 346 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 LRRC66Q68CR7 880 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 NCEH1Q6PIU2 408 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 CD200R1Q8TD46 325 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 SLC25A13Q9UJS0 675 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 INSL6Q9Y581 213 aa14.19□□□□□ -0.14
SHROOM1-208ENST00000617339 MYLKQ15746 1914 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 F11P03951 625 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 HPCAL1P37235 193 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 CBLBQ13191 982 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 LRP8Q14114 963 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 RFTN1Q14699 578 aaPredicted RBP14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 FBXO46Q6PJ61 603 aaPredicted RBP14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 ALPK1Q96QP1 1244 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF385DQ9H6B1 395 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 NANOGQ9H9S0 305 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 NOX1Q9Y5S8 564 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 GLYATL1P3A0A0U1RQE8 302 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 EPOP01588 193 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 CAPNS1P04632 268 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 IL7RP16871 459 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 CR2P20023 1033 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 PSMA4P25789 261 aaKnown RBP14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 GSSP48637 474 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 LCP2Q13094 533 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 PTGR1Q14914 329 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 HERC3Q15034 1050 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 SF1Q15637 639 aaKnown RBP14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 ANKRD46Q86W74 232 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 CLIP4Q8N3C7 705 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 ANKFN1Q8N957 763 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 GPR26Q8NDV2 337 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 ABHD11Q8NFV4 315 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 HTRA1Q92743 480 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 LHPPQ9H008 270 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 LTB4R2Q9NPC1 389 aa14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 TUBA8Q9NY65 449 aaPredicted RBP14.18□□□□□ -0.14
SHROOM1-208ENST00000617339 H0YJX3 145 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 BPIP17213 487 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 LBPP18428 481 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ITGALP20701 1170 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 RPL38P63173 70 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SPCS2Q15005 226 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 PLEKHG6Q3KR16 790 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 LETMD1Q6P1Q0 360 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF420Q8TAQ5 688 aaPredicted RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 CSF3RQ99062 836 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 WRAP53Q9BUR4 548 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 RIC8BQ9NVN3 520 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 IL17CQ9P0M4 197 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SUN2Q9UH99 717 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 POLR3HQ9Y535 204 aaPredicted RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 HSPA1AP0DMV8 641 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 HSPA1BP0DMV9 641 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 NR4A2P43354 598 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SMARCB1Q12824 385 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ABRQ12979 859 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 INPP5AQ14642 412 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 LY6G5CQ5SRR4 150 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SERPINA13PQ6UXR4 307 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 GPRIN3Q6ZVF9 776 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 KIAA1191Q96A73 305 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 MARCH7Q9H992 704 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 IL21Q9HBE4 155 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 MRPL40Q9NQ50 206 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF225Q9UK10 706 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ITGB1BP2Q9UKP3 347 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 BACE2Q9Y5Z0 518 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SH3BP5O60239 455 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 RSL1D1O76021 490 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF7P17097 686 aaPredicted RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 KCNK10P57789 538 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms