RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MYO1HQ8N1T3 1032 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 OR4D9Q8NGE8 314 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 NCSTNQ92542 709 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 RSC1A1Q92681 617 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 RAD51AP1Q96B01 352 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 PDLIM5Q96HC4 596 aaKnown RBP18.79■□□□□ 0.6
UPF1-209ENST00000600310 TMEM74Q96NL1 305 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 DEPDC7Q96QD5 511 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 DHRS4Q9BTZ2 278 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 RAB33BQ9H082 229 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 SRMSQ9H3Y6 488 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 CAB39LQ9H9S4 337 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 PDP2Q9P2J9 529 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 EPHA6Q9UF33 1036 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 FETUBQ9UGM5 382 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 ZNF180Q9UJW8 692 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 WASF3Q9UPY6 502 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 ICKQ9UPZ9 632 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 IKBKGQ9Y6K9 419 aa18.79■□□□□ 0.6
UPF1-209ENST00000600310 OR5K3A6NET4 321 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 ARHGEF33A8MVX0 844 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 TOP3BO95985 862 aaKnown RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 CATP04040 527 aaKnown RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 SHMT2P34897 504 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 BDKRB1P46663 353 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 CAPZBP47756 277 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 SERPINB9P50453 376 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 PDX1P52945 283 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 RAB10P61026 200 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 GRB7Q14451 532 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 ZNF460Q14592 562 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 ZNF574Q6ZN55 896 aaPredicted RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 AMIGO1Q86WK6 493 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 OOSP2Q86WS3 158 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 PLXDC1Q8IUK5 500 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 SLITRK4Q8IW52 837 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 NKAPQ8N5F7 415 aaKnown RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 FBXO15Q8NCQ5 510 aaPredicted RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 DCAKDQ8WVC6 231 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 UBLCP1Q8WVY7 318 aaPredicted RBP18.78■□□□□ 0.6
UPF1-209ENST00000600310 CAVIN3Q969G5 261 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 GRAMD1AQ96CP6 724 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 MENTQ9BUN1 341 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 GPAMQ9HCL2 828 aa18.78■□□□□ 0.6
UPF1-209ENST00000600310 OR6C74A6NCV1 312 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 TMX2-CTNND1H3BSU7 103 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 PHGDHO43175 533 aaKnown RBP18.77■□□□□ 0.6
UPF1-209ENST00000600310 CSO75390 466 aaKnown RBP18.77■□□□□ 0.6
UPF1-209ENST00000600310 C9P02748 559 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 C8GP07360 202 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 CCKBRP32239 447 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 INHBCP55103 352 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 TARDBPQ13148 414 aaKnown RBP eCLIP18.77■□□□□ 0.6
UPF1-209ENST00000600310 CCSMST1Q4G0I0 132 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.77■□□□□ 0.6
UPF1-209ENST00000600310 MROH9Q5TGP6 573 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 B3GNT8Q7Z7M8 397 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 ANKRD7Q92527 254 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 NRTNQ99748 197 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 TWSG1Q9GZX9 223 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 SEMA6CQ9H3T2 930 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 XKR8Q9H6D3 395 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 HRASLS2Q9NWW9 162 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 OR6C2Q9NZP2 312 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 TMEM9Q9P0T7 183 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 PLAGL1Q9UM63 463 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 ENTPD2Q9Y5L3 495 aa18.77■□□□□ 0.6
UPF1-209ENST00000600310 MN1Q10571 1320 aaPredicted RBP18.76■□□□□ 0.59
UPF1-209ENST00000600310 IGHV5-10-1A0A0J9YXX1 117 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 FAM149AA5PLN7 773 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 MYO1CO00159 1063 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 BTN3A3O00478 584 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 SLC16A5O15375 505 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 CAPN5O15484 640 aaPredicted RBP18.76■□□□□ 0.59
UPF1-209ENST00000600310 ZBTB14O43829 449 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 CNTFP26441 200 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 GCAP28676 217 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 CRABP2P29373 138 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 PKLRP30613 574 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 HSD17B3P37058 310 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 RAB28P51157 221 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 SP140Q13342 867 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 BMPR2Q13873 1038 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 TAOK1Q7L7X3 1001 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 OR9A1PQ8NGU1 263 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 ANKRD49Q8WVL7 239 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 ZDHHC12Q96GR4 267 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 CCDC77Q9BR77 488 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 SLC12A9Q9BXP2 914 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 ZMYND15Q9H091 742 aa18.76■□□□□ 0.59
UPF1-209ENST00000600310 MATN2O00339 956 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 BTN3A1O00481 513 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 RASGRF2O14827 1237 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 KRT38O76015 456 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 THRAP10827 490 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 POLR2CP19387 275 aaPredicted RBP18.75■□□□□ 0.59
UPF1-209ENST00000600310 MAP4P27816 1152 aaKnown RBP18.75■□□□□ 0.59
UPF1-209ENST00000600310 CSRP3P50461 194 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 GFERP55789 205 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 PRKAA1Q13131 559 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms