RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GTF2H3Q13889 308 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 AP5B1Q2VPB7 878 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 BCL7AQ4VC05 210 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 FAM46CQ5VWP2 391 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 IRGCQ6NXR0 463 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 SCIMPQ6UWF3 145 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 SPATA24Q86W54 205 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 ZFAND4Q86XD8 727 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 KLHDC8AQ8IYD2 350 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 PQLC1Q8N2U9 271 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 SNX31Q8N9S9 440 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 GOLM1Q8NBJ4 401 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 GLB1L3Q8NCI6 653 aaPredicted RBP11.01□□□□□ -0.65
LIG3-204ENST00000585740 HIPK4Q8NE63 616 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 USP7Q93009 1102 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 NXPE3Q969Y0 559 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 ZUFSPQ96AP4 578 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 ARRDC3Q96B67 414 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 TMEM159Q96B96 161 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 NUS1Q96E22 293 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 DUS3LQ96G46 650 aaKnown RBP11.01□□□□□ -0.65
LIG3-204ENST00000585740 ZNF514Q96K75 400 aaPredicted RBP11.01□□□□□ -0.65
LIG3-204ENST00000585740 LRGUKQ96M69 825 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 CDK15Q96Q40 435 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 EFHD1Q9BUP0 239 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 HDAC8Q9BY41 377 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 MTG2Q9H4K7 406 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 C11orf16Q9NQ32 467 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 HPS4Q9NQG7 708 aa11.01□□□□□ -0.65
LIG3-204ENST00000585740 SLC5A10A0PJK1 596 aa11□□□□□ -0.65
LIG3-204ENST00000585740 TBC1D3BA6NDS4 549 aa11□□□□□ -0.65
LIG3-204ENST00000585740 LOC730098B7Z3J9 87 aa11□□□□□ -0.65
LIG3-204ENST00000585740 NPIPB8E9PQR5 432 aa11□□□□□ -0.65
LIG3-204ENST00000585740 H3BNX3 289 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ARNTLO00327 626 aa11□□□□□ -0.65
LIG3-204ENST00000585740 AREL1O15033 823 aa11□□□□□ -0.65
LIG3-204ENST00000585740 NPC1O15118 1278 aa11□□□□□ -0.65
LIG3-204ENST00000585740 LZTS3O60299 673 aaPredicted RBP11□□□□□ -0.65
LIG3-204ENST00000585740 GPR37L1O60883 481 aa11□□□□□ -0.65
LIG3-204ENST00000585740 DNAJA2O60884 412 aa11□□□□□ -0.65
LIG3-204ENST00000585740 PSIP1O75475 530 aaKnown RBP11□□□□□ -0.65
LIG3-204ENST00000585740 JAK1P23458 1154 aa11□□□□□ -0.65
LIG3-204ENST00000585740 PRPH2P23942 346 aa11□□□□□ -0.65
LIG3-204ENST00000585740 FCARP24071 287 aa11□□□□□ -0.65
LIG3-204ENST00000585740 MAPK1P28482 360 aa11□□□□□ -0.65
LIG3-204ENST00000585740 GNPDA1P46926 289 aa11□□□□□ -0.65
LIG3-204ENST00000585740 SLC7A2P52569 658 aa11□□□□□ -0.65
LIG3-204ENST00000585740 UFM1P61960 85 aa11□□□□□ -0.65
LIG3-204ENST00000585740 MS4A2Q01362 244 aa11□□□□□ -0.65
LIG3-204ENST00000585740 DPTQ07507 201 aa11□□□□□ -0.65
LIG3-204ENST00000585740 FCHO2Q0JRZ9 810 aa11□□□□□ -0.65
LIG3-204ENST00000585740 TMEM115Q12893 351 aaPredicted RBP11□□□□□ -0.65
LIG3-204ENST00000585740 RUNX3Q13761 415 aa11□□□□□ -0.65
LIG3-204ENST00000585740 NFYCQ13952 458 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ZNF234Q14588 700 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ABRAXAS2Q15018 415 aa11□□□□□ -0.65
LIG3-204ENST00000585740 VPS26BQ4G0F5 336 aa11□□□□□ -0.65
LIG3-204ENST00000585740 CACHD1Q5VU97 1274 aa11□□□□□ -0.65
LIG3-204ENST00000585740 CYP20A1Q6UW02 462 aa11□□□□□ -0.65
LIG3-204ENST00000585740 LAYNQ6UX15 382 aa11□□□□□ -0.65
LIG3-204ENST00000585740 SERPINA13PQ6UXR4 307 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ERN2Q76MJ5 926 aaKnown RBP11□□□□□ -0.65
LIG3-204ENST00000585740 RETREG3Q86VR2 466 aa11□□□□□ -0.65
LIG3-204ENST00000585740 DPP10Q8N608 796 aa11□□□□□ -0.65
LIG3-204ENST00000585740 L3MBTL4Q8NA19 623 aa11□□□□□ -0.65
LIG3-204ENST00000585740 GDPD5Q8WTR4 605 aa11□□□□□ -0.65
LIG3-204ENST00000585740 NAT14Q8WUY8 206 aa11□□□□□ -0.65
LIG3-204ENST00000585740 LRRC58Q96CX6 371 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ZFYVE19Q96K21 471 aa11□□□□□ -0.65
LIG3-204ENST00000585740 CCDC138Q96M89 665 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ECSITQ9BQ95 431 aa11□□□□□ -0.65
LIG3-204ENST00000585740 C1orf50Q9BV19 199 aa11□□□□□ -0.65
LIG3-204ENST00000585740 TMEM245Q9H330 911 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ACTR8Q9H981 624 aa11□□□□□ -0.65
LIG3-204ENST00000585740 LRTM1Q9HBL6 345 aa11□□□□□ -0.65
LIG3-204ENST00000585740 SLC52A3Q9NQ40 469 aa11□□□□□ -0.65
LIG3-204ENST00000585740 MAP10Q9P2G4 905 aa11□□□□□ -0.65
LIG3-204ENST00000585740 THAP10Q9P2Z0 257 aaPredicted RBP11□□□□□ -0.65
LIG3-204ENST00000585740 KLQ9UEF7 1012 aa11□□□□□ -0.65
LIG3-204ENST00000585740 PACSIN3Q9UKS6 424 aa11□□□□□ -0.65
LIG3-204ENST00000585740 ZNF490Q9ULM2 529 aaPredicted RBP11□□□□□ -0.65
LIG3-204ENST00000585740 AP3M1Q9Y2T2 418 aa11□□□□□ -0.65
LIG3-204ENST00000585740 MUC6Q6W4X9 2439 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 DOCK8Q8NF50 2099 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 PRSS51A0A1B0GVH4 220 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 TCRBV3S1A0A5B6 114 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 AQP12BA6NM10 295 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 RFXAPO00287 272 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 RSL1D1O76021 490 aaKnown RBP10.99□□□□□ -0.65
LIG3-204ENST00000585740 APODP05090 189 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 PRPS2P11908 318 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 ADRB3P13945 408 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 SLC2A4P14672 509 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 ACPPP15309 386 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 GDF5P43026 501 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 GPR1P46091 355 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 ERFP50548 548 aa10.99□□□□□ -0.65
LIG3-204ENST00000585740 CLNS1AP54105 237 aaKnown RBP10.99□□□□□ -0.65
LIG3-204ENST00000585740 EEFSECP57772 596 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms