RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SLAMF9Q96A28 289 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 SPDL1Q96EA4 605 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 SFXN2Q96NB2 322 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF830Q96NB3 372 aaPredicted RBP4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 TAB2Q9NYJ8 693 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 ERRFI1Q9UJM3 462 aaPredicted RBP4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 ANAPC2Q9UJX6 822 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 MTUS1Q9ULD2 1270 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 TRPV2Q9Y5S1 764 aa4.14□□□□□ -1.75
SMCHD1-204ENST00000581226 TCRBV21S2A2A0A5A6 115 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 SYNDIG1LA6NDD5 238 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 TMEM221A6NGB7 291 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 ZG16O60844 167 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 WDPCPO95876 746 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 TRUB2O95900 331 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 NGFP01138 241 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 LINGO3P0C6S8 592 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 DANCRP0C864 163 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 EFNA1P20827 205 aaPredicted RBP4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 NR0B1P51843 470 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 PRPF4BQ13523 1007 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 SNTB1Q13884 538 aaKnown RBP4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 TAF13Q15543 124 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 LETM2Q2VYF4 491 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 GSG1LQ6UXU4 331 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 CAMKMTQ7Z624 323 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF843Q8N446 348 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 CCDC107Q8WV48 283 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 TEKT4Q8WW24 435 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 TMEM190Q8WZ59 177 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 SEPHS2Q99611 448 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 LITAFQ99732 161 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 SERINC1Q9NRX5 453 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 OLAHQ9NV23 265 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 ZDHHC2Q9UIJ5 367 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 RIPK3Q9Y572 518 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 STK36Q9NRP7 1315 aa4.13□□□□□ -1.75
SMCHD1-204ENST00000581226 LOC101059948A0A1B0GTJ6 334 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 A0A1W2PN81 502 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 FEZF1A0PJY2 475 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ATP6V0E1O15342 81 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 RNASEH1O60930 286 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CLPTM1O96005 669 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 EDN1P05305 212 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ADRB2P07550 413 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 GNB3P16520 340 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CHRNA7P36544 502 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 MTHFRP42898 656 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CAPZA2P47755 286 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CCR3P51677 355 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ATP12AP54707 1039 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 GNB1P62873 340 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 PRKCZQ05513 592 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 GPR17Q13304 367 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 PPIGQ13427 754 aaKnown RBP eCLIP4.12□□□□□ -1.759e-7■□□□□ 10.7
SMCHD1-204ENST00000581226 MRGPRG-AS1Q2M3A8 158 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 TMEM266Q2M3C6 531 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 GTDC1Q4AE62 458 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 PHLDA2Q53GA4 152 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 C9orf152Q5JTZ5 239 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ELFN2Q5R3F8 820 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CEP85LQ5SZL2 805 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ARHGEF16Q5VV41 709 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 TMEM139Q8IV31 216 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 MAPKAPK5-AS1Q8N8E1 139 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 TC2NQ8N9U0 490 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 NPEPL1Q8NDH3 523 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 SSMEM1Q8WWF3 244 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 SECISBP2LQ93073 1101 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 CENPOQ9BU64 300 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 NUP85Q9BW27 656 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 RBM4Q9BWF3 364 aaKnown RBP4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 BARHL1Q9BZE3 327 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 LAT2Q9GZY6 243 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 SDR39U1Q9NRG7 319 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF701Q9NV72 531 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 FLRT3Q9NZU0 649 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 LRWD1Q9UFC0 647 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 IL17BQ9UHF5 180 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 SLC24A2Q9UI40 661 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 PADI2Q9Y2J8 665 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 TTLL3Q9Y4R7 772 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 WDR81Q562E7 1941 aa4.12□□□□□ -1.75
SMCHD1-204ENST00000581226 IGHV4-61A0A0C4DH41 118 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF197O14709 1029 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 P4HA2O15460 535 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 FIBPO43427 364 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 PSMD10O75832 226 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 EML2O95834 649 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 IGHV4-59P01825 116 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 APOHP02749 345 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 SMIM18P0DKX4 95 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 IL11P20809 199 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 CA4P22748 312 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 B3GALT5-AS1P59052 145 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 ALCAMQ13740 583 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 CCDC6Q16204 474 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 ITPRIPL2Q3MIP1 535 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 FFAR4Q5NUL3 377 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 CYP4A22Q5TCH4 519 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms