RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 USH1CQ9Y6N9 552 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 UTP20O75691 2785 aaKnown RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 CHD5Q8TDI0 1954 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 CCDC189A1A4V9 331 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 TSPAN11A1L157 253 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 NPIPB15A6NHN6 443 aaPredicted RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 A8MX80 341 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 CFAP99D6REC4 459 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 PRMT5O14744 637 aaPredicted RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 TRIM13O60858 407 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 FAM87AP0C7U9 286 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 ADRB3P13945 408 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 HGFP14210 728 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 CD9P21926 228 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 XIAPP98170 497 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 ELP6Q0PNE2 266 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 BST1Q10588 318 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 NFATC2Q13469 925 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 PEX6Q13608 980 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SEMA3AQ14563 771 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 PCLAFQ15004 111 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 TMEM259Q4ZIN3 620 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 ZNF789Q5FWF6 425 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 CFAP157Q5JU67 520 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 LRRC66Q68CR7 880 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 KIAA1161Q6NSJ0 714 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 RAB11FIP2Q7L804 512 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 YTHDF3Q7Z739 585 aaKnown RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 SERPINA9Q86WD7 417 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 LURAP1LQ8IV03 231 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SLC22A9Q8IVM8 553 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 C10orf107Q8IVU9 208 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SLC35F3Q8IY50 421 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 KIRREL3Q8IZU9 778 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 PLD6Q8N2A8 252 aaKnown RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 FSTL5Q8N475 847 aaPredicted RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 AFAP1L2Q8N4X5 818 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 HEXDCQ8WVB3 486 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 BTN2A2Q8WVV5 523 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 KCNJ9Q92806 393 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 NXNL1Q96CM4 212 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SGF29Q96ES7 293 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SMIM14Q96QK8 99 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 OLFM1Q99784 485 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 SLCO1B3Q9NPD5 702 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 IL26Q9NPH9 171 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 XPR1Q9UBH6 696 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 B4GALT6Q9UBX8 382 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 APOBEC3BQ9UH17 382 aaKnown RBP9.97□□□□□ -0.81
SS18-210ENST00000578700 PADI4Q9UM07 663 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 WASF2Q9Y6W5 498 aa9.97□□□□□ -0.81
SS18-210ENST00000578700 RELNP78509 3460 aa9.96□□□□□ -0.81
SS18-210ENST00000578700 CCT8L1PA6NM43 557 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 C16orf96A6NNT2 1141 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 SYCE1LA8MT33 242 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 PLD2O14939 933 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 YY2O15391 372 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 JMJD7P0C870 316 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 BPIP17213 487 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 TFEBP19484 476 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 RPS3P23396 243 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-210ENST00000578700 ATP5F1P24539 256 aaPredicted RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 UGT1A5P35504 534 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 SERPINB5P36952 375 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 SLC1A6P48664 564 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 RGS4P49798 205 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 THOP1P52888 689 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 ARFIP2P53365 341 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 CDKN2DP55273 166 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 HNRNPH2P55795 449 aaKnown RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 IL2P60568 153 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 ABCE1P61221 599 aaKnown RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 CCL7P80098 99 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 SRSF1Q07955 248 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-210ENST00000578700 SF3A3Q12874 501 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-210ENST00000578700 ZNF460Q14592 562 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 TTLL9Q3SXZ7 439 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 MANEAQ5SRI9 462 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 LIPMQ5VYY2 423 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 DPPA4Q7L190 304 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 RD3Q7Z3Z2 195 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 B3GNT8Q7Z7M8 397 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 PIANPQ8IYJ0 282 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 PHACTR4Q8IZ21 702 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 CENPLQ8N0S6 344 aaPredicted RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 SDR16C5Q8N3Y7 309 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 NAT6Q93015 286 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 DCUN1D1Q96GG9 259 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 UBXN10Q96LJ8 280 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 GFM1Q96RP9 751 aaKnown RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 COPS8Q99627 209 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 BOCQ9BWV1 1114 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 STRADBQ9C0K7 418 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 FAM83DQ9H4H8 585 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 EML4Q9HC35 981 aaKnown RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 ZNF358Q9NW07 568 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 OXSMQ9NWU1 459 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 PISDQ9UG56 409 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 ATXN7L1Q9ULK2 861 aaPredicted RBP9.96□□□□□ -0.82
SS18-210ENST00000578700 TMCO1Q9UM00 188 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms