RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ARHGEF33A8MVX0 844 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 BTN3A1O00481 513 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 MT-ND3P03897 115 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 CD1DP15813 335 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 BDKRB1P46663 353 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 ACADVLP49748 655 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 ILKQ13418 452 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 TRIP6Q15654 476 aaKnown RBP16.62■□□□□ 0.25
NUP88-210ENST00000574867 HDXQ7Z353 690 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 LCA5Q86VQ0 697 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 TSNARE1Q96NA8 513 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 RTKNQ9BST9 563 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 RAB11FIP5Q9BXF6 653 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 SLC12A9Q9BXP2 914 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 TFB2MQ9H5Q4 396 aaKnown RBP16.62■□□□□ 0.25
NUP88-210ENST00000574867 NMRAL1Q9HBL8 299 aa16.62■□□□□ 0.25
NUP88-210ENST00000574867 NOVA2Q9UNW9 492 aaKnown RBP16.62■□□□□ 0.25
NUP88-210ENST00000574867 FAM221BA6H8Z2 402 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 KLHL2O95198 593 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 TSNAXIP1Q2TAA8 658 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 PPM1JQ5JR12 505 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 KLC3Q6P597 504 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 CENPLQ8N0S6 344 aaPredicted RBP16.61■□□□□ 0.25
NUP88-210ENST00000574867 CYP4X1Q8N118 509 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 RAB42Q8N4Z0 105 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 OR52E1Q8NGJ3 308 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 PARVBQ9HBI1 364 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 KCNK4Q9NYG8 393 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 TDRKHQ9Y2W6 561 aaKnown RBP16.61■□□□□ 0.25
NUP88-210ENST00000574867 PCDHGA1Q9Y5H4 931 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 PRAMEF33A0A0G2JMD5 474 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 MYO1CO00159 1063 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 CEACAM1P13688 526 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 KPNA2P52292 529 aaKnown RBP16.61■□□□□ 0.25
NUP88-210ENST00000574867 GPLD1P80108 840 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 IRF9Q00978 393 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 PRKG2Q13237 762 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 RSPO4Q2I0M5 234 aaPredicted RBP16.61■□□□□ 0.25
NUP88-210ENST00000574867 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.61■□□□□ 0.25
NUP88-210ENST00000574867 PERM1Q5SV97 790 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 SPRED1Q7Z699 444 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 MCOLN3Q8TDD5 553 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 KCTD4Q8WVF5 259 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 CCDC3Q9BQI4 270 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 TRIM54Q9BYV2 358 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 VIPAS39Q9H9C1 493 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 IGSF5Q9NSI5 407 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 PCMTD2Q9NV79 361 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 SPATA7Q9P0W8 599 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 ADAMTS6Q9UKP5 1117 aa16.61■□□□□ 0.25
NUP88-210ENST00000574867 NPEPPSL1A6NEC2 478 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 RGS16O15492 202 aaPredicted RBP16.6■□□□□ 0.25
NUP88-210ENST00000574867 SHMT2P34897 504 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 AP1S2P56377 157 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 KLHL35Q6PF15 583 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 SBSNQ6UWP8 590 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 CLEC14AQ86T13 490 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 ZNF761Q86XN6 746 aaPredicted RBP16.6■□□□□ 0.25
NUP88-210ENST00000574867 OR10G6Q8NH81 332 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 LCN9Q8WX39 176 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 KIAA1191Q96A73 305 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 GOLGA6L10A6NI86 522 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 CDC7O00311 574 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 RFPL3O75679 317 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 HIST1H2AGP0C0S8 130 aaPredicted RBP16.6■□□□□ 0.25
NUP88-210ENST00000574867 CDK4P11802 303 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 HIST1H2ADP20671 130 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 DLG1Q12959 904 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 ACAP2Q15057 778 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 TSNQ15631 228 aaKnown RBP16.6■□□□□ 0.25
NUP88-210ENST00000574867 PPP1R3AQ16821 1122 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 FRA10AC1Q70Z53 315 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 TRABD2AQ86V40 505 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 SPATA6LQ8N4H0 392 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 OR9A1PQ8NGU1 263 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 WDR48Q8TAF3 677 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 NXNL1Q96CM4 212 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 HIST1H2AHQ96KK5 128 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 PKNOX2Q96KN3 472 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 HIST1H2AJQ99878 128 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 H2AFJQ9BTM1 129 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 RDH14Q9HBH5 336 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 SENP1Q9P0U3 644 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 PDE10AQ9Y233 779 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 CEP250Q9BV73 2442 aa16.6■□□□□ 0.25
NUP88-210ENST00000574867 IGHV1OR21-1A0A087WYE8 117 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 DUX1O43812 170 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 GSTA1P08263 222 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 PYGBP11216 843 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 TFEBP19484 476 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 ALDH4A1P30038 563 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 RAB28P51157 221 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 GRB7Q14451 532 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 RHEBL1Q8TAI7 183 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 STAG3L4Q8TBR4 150 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 DLG3Q92796 817 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 PGM2Q96G03 612 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 TBC1D10AQ9BXI6 508 aa16.59■□□□□ 0.25
NUP88-210ENST00000574867 STMN4Q9H169 189 aaPredicted RBP16.59■□□□□ 0.25
NUP88-210ENST00000574867 SRMSQ9H3Y6 488 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms