RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PTPRDP23468 1912 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PATJQ8NI35 1801 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 MYADML2A6NDP7 307 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 IQCF5A8MTL0 148 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 XPNPEP2O43895 674 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CLDN11O75508 207 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 GLUD1P00367 558 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KRT6AP02538 564 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KRT6BP04259 564 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 NRIP1P48552 1158 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KRT6CP48668 564 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 PIK3CGP48736 1102 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 MVKQ03426 396 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 EMX1Q04741 257 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 TWF1Q12792 350 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 NPTX1Q15818 432 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CTF1Q16619 201 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 VARS2Q5ST30 1063 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ZDHHC21Q8IVQ6 265 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KLHDC9Q8NEP7 349 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CNIH3Q8TBE1 160 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 DACH2Q96NX9 599 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 NSUN3Q9H649 340 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 INIPQ9NRY2 104 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 IL37Q9NZH6 218 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KIF17Q9P2E2 1029 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 INTS6Q9UL03 887 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 SAMD4AQ9UPU9 718 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 GMPPBQ9Y5P6 360 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ST14Q9Y5Y6 855 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 OR6C75A6NL08 312 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ZBBXA8MT70 800 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 EVPLLA8MZ36 301 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 MYO1GB0I1T2 1018 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF682O95780 498 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 IL1RNP18510 177 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 HMGCS1Q01581 520 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KIAA0040Q15053 153 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 LTB4R2Q9NPC1 389 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 EVLQ9UI08 416 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 PCDHGB1Q9Y5G3 927 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 SYN3O14994 580 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 FAM20BO75063 409 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 PRLP01236 227 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 MAGEA10P43363 369 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 KCNQ1P51787 676 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CLCN7P51798 805 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 LSM3P62310 102 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 DPY19L1Q2PZI1 675 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 SHQ1Q6PI26 577 aaKnown RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 GALNT5Q7Z7M9 940 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 NUDT8Q8WV74 236 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 FAR1Q8WVX9 515 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 MYEOVQ96EZ4 313 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CCDC97Q96F63 343 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-207ENST00000572253 CCSER2Q9H7U1 834 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ERVK-18Q9QC07 812 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF229Q9UJW7 825 aa10.54□□□□□ -0.72
CCDC40-207ENST00000572253 ILVBLA1L0T0 632 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 H7C0S8 307 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 PER2O15055 1255 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 RGS10O43665 173 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 MAN1A2O60476 641 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SEC24AO95486 1093 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 EPB42P16452 691 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 ITGB6P18564 788 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 CR2P20023 1033 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 PCMT1P22061 227 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SERPINB1P30740 379 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 FMO3P31513 532 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 RXRGP48443 463 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 RPS3AP61247 264 aaKnown RBP10.53□□□□□ -0.72
CCDC40-207ENST00000572253 RAPSNQ13702 412 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SIM2Q14190 667 aaPredicted RBP10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SPRYD7Q5W111 196 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SBSNQ6UWP8 590 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 HORMAD1Q86X24 394 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 PHACTR4Q8IZ21 702 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF540Q8NDQ6 660 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 ZFP90Q8TF47 636 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 SMIM14Q96QK8 99 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 ZBED2Q9BTP6 218 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 CIPCQ9C0C6 399 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 KLHL25Q9H0H3 589 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 KCNH6Q9H252 994 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 CLMPQ9H6B4 373 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 TRPS1Q9UHF7 1281 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 DNMT3LQ9UJW3 386 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 GPC6Q9Y625 555 aaPredicted RBP10.53□□□□□ -0.72
CCDC40-207ENST00000572253 A0A096LPI6 279 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 M0QX08 132 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 MANBAO00462 879 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 MAPK1P28482 360 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 CXCR4P61073 352 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 ABHD18Q0P651 414 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 DGCR6Q14129 220 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 AAK1Q2M2I8 961 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 KRTCAP2Q8N6L1 136 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 IKZF5Q9H5V7 419 aa10.53□□□□□ -0.72
CCDC40-207ENST00000572253 KAT8Q9H7Z6 458 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms