RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 STK36Q9NRP7 1315 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CASKIN1Q8WXD9 1431 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 NSD3Q9BZ95 1437 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ATP10DQ9P241 1426 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PREX2Q70Z35 1606 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 IQGAP3Q86VI3 1631 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PARP4Q9UKK3 1724 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 A0A0G2JMP0 313 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TMEM120BA0PK00 339 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 NCF1BA6NI72 391 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TMEM210A6NLX4 147 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 A8MU76 341 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 NCF1CA8MVU1 366 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 VSTM5A8MXK1 200 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 BTBD18B2RXH4 712 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KLRF2D3W0D1 207 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 H3BMM5 538 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PLK4O00444 970 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CTDSP2O14595 271 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GPR171O14626 319 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CASC3O15234 703 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TXNL1O43396 289 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DENRO43583 198 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 BUD23O43709 281 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TRIAP1O43715 76 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SYNCRIPO60506 623 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TSPAN3O60637 253 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A9O60656 530 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SMPD2O60906 423 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MED24O75448 989 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ABLIM3O94929 683 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CCNB2O95067 398 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RASAL1O95294 804 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MATN4O95460 622 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 LDOC1O95751 146 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 PTBP3O95758 552 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 FTCDO95954 541 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FABP1P07148 127 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CYP21A2P08686 494 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KRT19P08727 400 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 QDPRP09417 244 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MYBP10242 640 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PRPS2P11908 318 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ATP1A3P13637 1013 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CYP11B1P15538 503 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A6P19224 532 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 IMPDH1P20839 514 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FGFR2P21802 821 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A1P22309 533 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A4P22310 534 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RPS6KB1P23443 525 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SERPINB1P30740 379 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 BMI1P35226 326 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A3P35503 534 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A5P35504 534 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 HSD17B3P37058 310 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SPAM1P38567 509 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CASP3P42574 277 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 LEPRP48357 1165 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 NDUFV1P49821 464 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 P2RY4P51582 365 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RIDAP52758 137 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 NDST1P52848 882 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CASP9P55211 416 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CDH6P55285 790 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CARD18P57730 90 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MAGOHP61326 146 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 COPZ1P61923 177 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 AP1S1P61966 158 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SIM1P81133 766 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 LRRC63Q05C16 580 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RIPPLY1Q0D2K3 151 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CALCOCO2Q13137 446 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KCNC3Q14003 757 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 HABP2Q14520 560 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 MFSD13AQ14CX5 517 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 VEPH1Q14D04 833 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DLG2Q15700 870 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TMEM44Q2T9K0 475 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 EIF2S3LQ2VIR3 472 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TRMT5Q32P41 509 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 PRR16Q569H4 304 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SLC45A4Q5BKX6 768 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ACSBG2Q5FVE4 666 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FSCBQ5H9T9 825 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KHDC1LQ5JSQ8 128 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TMEM31Q5JXX7 168 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DGKKQ5KSL6 1271 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CDKL4Q5MAI5 379 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PPM1LQ5SGD2 360 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GPATCH4Q5T3I0 446 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 BEND3Q5T5X7 828 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ATF7IP2Q5U623 682 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FAM171A1Q5VUB5 890 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ANKRD40Q6AI12 368 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PTRHD1Q6GMV3 140 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 PYHIN1Q6K0P9 492 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT3A1Q6NUS8 523 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DPY19L2P1Q6NXN4 242 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms