RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MOXD2PA6NHM9 499 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PRMT5O14744 637 aaPredicted RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 TAPBPO15533 448 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 OAZ2O95190 189 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 S100BP04271 92 aaPredicted RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 CTPS1P17812 591 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 MSH3P20585 1137 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PSMB9P28065 219 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CA5AP35218 305 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 SGSHP51688 502 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 GABARAPL2P60520 117 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 NCS1P62166 190 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 EPS8Q12929 822 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PHKG1Q16816 387 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ALG1LQ6GMV1 187 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 LAIR1Q6GTX8 287 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CES5AQ6NT32 575 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 MBOAT1Q6ZNC8 495 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 C16orf59Q7L2K0 433 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 MICU2Q8IYU8 434 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 SLC22A15Q8IZD6 547 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CADM3Q8N126 398 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 RORBQ92753 470 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PPP3R2Q96LZ3 170 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 UROC1Q96N76 676 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 HEPHQ9BQS7 1158 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ATP13A3Q9H7F0 1226 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 VPS9D1Q9Y2B5 631 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 GOLGA8CPA6NN73 597 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 MYO1GB0I1T2 1018 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 AREL1O15033 823 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 PFDN6O15212 129 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 JRKO75564 520 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 ZNF682O95780 498 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 IGLV3-27P01718 113 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 DSC3Q14574 896 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 PCBP2Q15366 365 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLN3-210ENST00000563874 INAQ16352 499 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 SPRYD7Q5W111 196 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 PTRHD1Q6GMV3 140 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 LRRC8DQ7L1W4 858 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 CYP4Z1Q86W10 505 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 AADATQ8N5Z0 425 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 TRPV1Q8NER1 839 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 OR5K1Q8NHB7 308 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 LKAAEAR1Q8TD35 194 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 MROQ9BYG7 248 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 AKIP1Q9NQ31 210 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 DCAF13Q9NV06 445 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 USE1Q9NZ43 259 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 ZNF490Q9ULM2 529 aaPredicted RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 PNMA8BQ9ULN7 279 aaPredicted RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 ORC6Q9Y5N6 252 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 GREB1Q4ZG55 1949 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 H0Y626 953 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 TRIM16O95361 564 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 FADS2O95864 444 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 ALPIP09923 528 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 CR2P20023 1033 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 PHC1P78364 1004 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 NPTX1Q15818 432 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 FAM151BQ6UXP7 276 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 DSG4Q86SJ6 1040 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 DENND1CQ8IV53 801 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 RGL4Q8IZJ4 473 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 RPL3LQ92901 407 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 EID2BQ96D98 161 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 FAM120BQ96EK7 910 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 FUBP3Q96I24 572 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLN3-210ENST00000563874 DHRS1Q96LJ7 313 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 KAT8Q9H7Z6 458 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 PRDM8Q9NQV8 689 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 INTS6Q9UL03 887 aaKnown RBP12.93□□□□□ -0.34
CLN3-210ENST00000563874 PMF1-BGLAPU3KQ54 211 aa12.93□□□□□ -0.34
CLN3-210ENST00000563874 ULK1O75385 1050 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ESR1P03372 595 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 BMP4P12644 408 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 IGFBP5P24593 272 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 EPHA2P29317 976 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 RUNDC3AQ59EK9 446 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 CEP68Q76N32 757 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 B3GNT8Q7Z7M8 397 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ADAMTSL2Q86TH1 951 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ADCK1Q86TW2 530 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ZNF598Q86UK7 904 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 ZCCHC7Q8N3Z6 543 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 HPS1Q92902 700 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 UBE2FQ969M7 185 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 INPP5KQ9BT40 448 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 MAGEH1Q9H213 219 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ATAD3AQ9NVI7 634 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 WWOXQ9NZC7 414 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 PCDHB9Q9Y5E1 797 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 TNPO3Q9Y5L0 923 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 RGS14O43566 566 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 SCELO95171 688 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 LRATO95237 230 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 UGT2B4P06133 528 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 AKR1A1P14550 325 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 CD6P30203 668 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms