RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LDB1Q86U70 411 aaPredicted RBP16.31■□□□□ 0.2
CLK3-210ENST00000563112 LRRC6Q86X45 466 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 SLC22A15Q8IZD6 547 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 CLIP3Q96DZ5 547 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 NRTNQ99748 197 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 KIFC1Q9BW19 673 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 KLHL25Q9H0H3 589 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 MRM3Q9HC36 420 aaKnown RBP16.31■□□□□ 0.2
CLK3-210ENST00000563112 TREX1Q9NSU2 369 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 GNPTGQ9UJJ9 305 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 TTC7AQ9ULT0 858 aaPredicted RBP16.31■□□□□ 0.2
CLK3-210ENST00000563112 KPNA5O15131 536 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 KRT14P02533 472 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 CHRM5P08912 532 aaPredicted RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 PVRP15151 417 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 UGT2B7P16662 529 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 NMBRP28336 390 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 VPS41P49754 854 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 TERF1P54274 439 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 GPS1Q13098 491 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 MRNIPQ6NTE8 343 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 FAM199XQ6PEV8 388 aaPredicted RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 TTC23LQ6PF05 361 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 ATG14Q6ZNE5 492 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 GPR135Q8IZ08 494 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 RASGEF1CQ8N431 466 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 OR1L3Q8NH93 324 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 CFAP61Q8NHU2 1237 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 C9orf43Q8TAL5 461 aaPredicted RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 MAGOHBQ96A72 148 aaKnown RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 TCTN2Q96GX1 697 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 LRFN5Q96NI6 719 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 ACTL8Q9H568 366 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 SYBUQ9NX95 663 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 MARCH4Q9P2E8 410 aaPredicted RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 FARSAQ9Y285 508 aaKnown RBP16.3■□□□□ 0.2
CLK3-210ENST00000563112 TENM4Q6N022 2769 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 SPTBP11277 2137 aa16.3■□□□□ 0.2
CLK3-210ENST00000563112 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.29■□□□□ 0.2
CLK3-210ENST00000563112 IQCF5A8MTL0 148 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ISM1B1AKI9 464 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 E7EQ34 232 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ZSCAN12O43309 604 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 GPC4O75487 556 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 VAPBO95292 243 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 HBQ1P09105 142 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 RPS3P23396 243 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLK3-210ENST00000563112 PTPN4P29074 926 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ITGA1P56199 1179 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ABRQ12979 859 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 GPS2Q13227 327 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 KIR2DS3Q14952 304 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ARMC3Q5W041 872 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 UNC5DQ6UXZ4 953 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 SYVN1Q86TM6 617 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 KRT222Q8N1A0 295 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 C19orf47Q8N9M1 422 aaKnown RBP16.29■□□□□ 0.2
CLK3-210ENST00000563112 OR2A14Q96R47 310 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 ACTR5Q9H9F9 607 aaPredicted RBP16.29■□□□□ 0.2
CLK3-210ENST00000563112 AKIRIN1Q9H9L7 192 aaPredicted RBP16.29■□□□□ 0.2
CLK3-210ENST00000563112 PLAGL1Q9UM63 463 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 SOX13Q9UN79 622 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 MRFAP1Q9Y605 127 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 KCNMB2Q9Y691 235 aa16.29■□□□□ 0.2
CLK3-210ENST00000563112 MYO18BQ8IUG5 2567 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 A0A0J9YY10 115 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 MEN1O00255 615 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 SLCO2B1O94956 709 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 TPBGLP0DKB5 382 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 PAMP19021 973 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 AOAHP28039 575 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 RAB28P51157 221 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 EIF3BP55884 814 aaKnown RBP16.28■□□□□ 0.2
CLK3-210ENST00000563112 NFKB2Q00653 900 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 KCNJ11Q14654 390 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 SLC5A12Q1EHB4 618 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 PLEKHS1Q5SXH7 462 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 RNF187Q5TA31 235 aaPredicted RBP16.28■□□□□ 0.2
CLK3-210ENST00000563112 CASC4Q6P4E1 433 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 CES3Q6UWW8 571 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 CDHR3Q6ZTQ4 885 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 OTOAQ7RTW8 1153 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 TRIM73Q86UV7 250 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 DCUN1D3Q8IWE4 304 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 LKAAEAR1Q8TD35 194 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 MFSD3Q96ES6 412 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 ABHD17AQ96GS6 310 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 TCF12Q99081 682 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 P2RY12Q9H244 342 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 CHST8Q9H2A9 424 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 GRPEL1Q9HAV7 217 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 SPHK1Q9NYA1 384 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 SAMD15Q9P1V8 674 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 CDYLQ9Y232 598 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 MAN2B2Q9Y2E5 1009 aa16.28■□□□□ 0.2
CLK3-210ENST00000563112 SEC16AO15027 2179 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 TCRBV7S3A2A0A539 114 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 MAGEB16A2A368 324 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 H3BMM5 538 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 MKRN2OSH3BPM6 223 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms