RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PDAP1Q13442 181 aaKnown RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 NAB1Q13506 487 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 PHKG1Q16816 387 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 ZXDCQ2QGD7 858 aaPredicted RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 MROH9Q5TGP6 573 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 FBXO38Q6PIJ6 1188 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 MBOAT1Q6ZNC8 495 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 C2orf73Q8N5S3 287 aaPredicted RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 LINC01555Q8NAE3 123 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 OR4E2Q8NGC2 313 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 OR5K2Q8NHB8 316 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 FLVCR1-AS1Q8TAF5 88 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 EPS8L3Q8TE67 593 aaKnown RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 SKA2Q8WVK7 121 aaPredicted RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 CAVIN3Q969G5 261 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 TWSG1Q9GZX9 223 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 ABCG4Q9H172 646 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 MVB12BQ9H7P6 319 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 UCK1Q9HA47 277 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 EVA1BQ9NVM1 165 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 SPHK1Q9NYA1 384 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 EURLQ9NYK6 297 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 KLHL42Q9P2K6 505 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 APOBEC2Q9Y235 224 aaKnown RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 TDRKHQ9Y2W6 561 aaKnown RBP9.51□□□□□ -0.89
CLK3-208ENST00000562626 WDFY3Q8IZQ1 3526 aa9.51□□□□□ -0.89
CLK3-208ENST00000562626 USP24Q9UPU5 2620 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 EXOC1LA0A1B0GW35 172 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 NPEPPSL1A6NEC2 478 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 F8W8V4 182 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 GFYI3L273 518 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 IFRD1O00458 451 aaPredicted RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 CSO75390 466 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 UBXN7O94888 489 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 MT-CO3P00414 261 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 PROS1P07225 676 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 SLC35E2BP0CK96 405 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 MPC1LP0DKB6 136 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 SPRP35270 261 aaPredicted RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 MAGEA12P43365 314 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 GPR3P46089 330 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 CAPZBP47756 277 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 LSSP48449 732 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 EPHA4P54764 986 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 YBX1P67809 324 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 POU4F1Q01851 419 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 BIRC2Q13490 618 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 FASTKQ14296 549 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 USP10Q14694 798 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 C16orf72Q14CZ0 275 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 PLCL1Q15111 1095 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 SBSNQ6UWP8 590 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 UNC5DQ6UXZ4 953 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 NEK10Q6ZWH5 1172 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 TAX1BP1Q86VP1 789 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 SLITRK4Q8IW52 837 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 FAM20CQ8IXL6 584 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 TBC1D21Q8IYX1 336 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 ADGRF3Q8IZF5 1079 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 CENPLQ8N0S6 344 aaPredicted RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 CYP4X1Q8N118 509 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 PLD6Q8N2A8 252 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 RCBTB1Q8NDN9 531 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 OR6C4Q8NGE1 309 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 GABPB2Q8TAK5 448 aaPredicted RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 MZB1Q8WU39 189 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 ASB11Q8WXH4 323 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 PTERQ96BW5 349 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 GFM1Q96RP9 751 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 TRIT1Q9H3H1 467 aaKnown RBP9.5□□□□□ -0.89
CLK3-208ENST00000562626 SNX15Q9NRS6 342 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 ENTPD2Q9Y5L3 495 aa9.5□□□□□ -0.89
CLK3-208ENST00000562626 IGHV5-10-1A0A0J9YXX1 117 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 OR6C74A6NCV1 312 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 OR5K3A6NET4 321 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 A8MU76 341 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 TRIM49D1C9J1S8 452 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 ZBTB14O43829 449 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 PRAMEF10O60809 474 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 CPNE6O95741 557 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 CD1DP15813 335 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 POLR2CP19387 275 aaPredicted RBP9.49□□□□□ -0.89
CLK3-208ENST00000562626 PSMB5P28074 263 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 PKLRP30613 574 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 MSH2P43246 934 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 SLCO1A2P46721 670 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 KCNC1P48547 511 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 KPNA2P52292 529 aaKnown RBP9.49□□□□□ -0.89
CLK3-208ENST00000562626 RAB10P61026 200 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 TUBB4BP68371 445 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 E2F1Q01094 437 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 PLOD1Q02809 727 aaPredicted RBP9.49□□□□□ -0.89
CLK3-208ENST00000562626 ZFP36L1Q07352 338 aaKnown RBP9.49□□□□□ -0.89
CLK3-208ENST00000562626 TARDBPQ13148 414 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLK3-208ENST00000562626 SQSTM1Q13501 440 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 SPIDRQ14159 915 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 OR4D1Q15615 310 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 PPP1R3AQ16821 1122 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 ISXQ2M1V0 245 aa9.49□□□□□ -0.89
CLK3-208ENST00000562626 TTLL9Q3SXZ7 439 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms