RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 TMEM259Q4ZIN3 620 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 C6orf136Q5SQH8 315 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 NEK5Q6P3R8 708 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 IL27RAQ6UWB1 636 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 TRIM46Q7Z4K8 759 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 PGAM4Q8N0Y7 254 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 L3MBTL4Q8NA19 623 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 TP53I13Q8NBR0 393 aaPredicted RBP12.59□□□□□ -0.39
SNX1-211ENST00000560829 TSPEARQ8WU66 669 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 WDR60Q8WVS4 1066 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 USP7Q93009 1102 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 MSANTD3Q96H12 275 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 MAGEB10Q96LZ2 347 aaPredicted RBP12.59□□□□□ -0.39
SNX1-211ENST00000560829 DNAJC11Q9NVH1 559 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 CCDC167Q9P0B6 97 aa12.59□□□□□ -0.39
SNX1-211ENST00000560829 DNMT3AQ9Y6K1 912 aaPredicted RBP12.59□□□□□ -0.39
SNX1-211ENST00000560829 CKAP5Q14008 2032 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 UNC80Q8N2C7 3258 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 BBIP1A8MTZ0 92 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 LSM1O15116 133 aaKnown RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 MBTPS2O43462 519 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 CIB2O75838 187 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 PCCBP05166 539 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 PBLDP30039 288 aaPredicted RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 MTTPP55157 894 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 PFN3P60673 137 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 TBL3Q12788 808 aaKnown RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 RPA4Q13156 261 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 KPNB1Q14974 876 aaKnown RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 ABRAXAS2Q15018 415 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 KIF19Q2TAC6 998 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 ATP6AP1LQ52LC2 224 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 PAOXQ6QHF9 649 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 SCIMPQ6UWF3 145 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 HACD2Q6Y1H2 254 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 CFAP206Q8IYR0 622 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 SFRP1Q8N474 314 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 OXR1Q8N573 874 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 OR9I1Q8NGQ6 314 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 MRPL1Q9BYD6 325 aaKnown RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 RNPEPL1Q9HAU8 725 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 MBNL1Q9NR56 388 aaKnown RBP12.58□□□□□ -0.4
SNX1-211ENST00000560829 FAM8A1Q9UBU6 413 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 FZD4Q9ULV1 537 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 RNF11Q9Y3C5 154 aa12.58□□□□□ -0.4
SNX1-211ENST00000560829 KCNE1BA0A087WTH5 132 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 FBP2O00757 339 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ENTPD5O75356 428 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 C1orf105O95561 183 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 LMNAP02545 664 aaKnown RBP12.57□□□□□ -0.4
SNX1-211ENST00000560829 ADPRHP54922 357 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 DIO3P55073 304 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ACTR3P61158 418 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 EMX2Q04743 252 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 LRP8Q14114 963 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 FBXO43Q4G163 708 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PDCD4Q53EL6 469 aaKnown RBP12.57□□□□□ -0.4
SNX1-211ENST00000560829 REP15Q6BDI9 236 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 USP30Q70CQ3 517 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 KBTBD6Q86V97 674 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 FBXW8Q8N3Y1 598 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ENDOVQ8N8Q3 282 aaKnown RBP12.57□□□□□ -0.4
SNX1-211ENST00000560829 CFAP61Q8NHU2 1237 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PPP3R2Q96LZ3 170 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ACTR8Q9H981 624 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PREBQ9HCU5 417 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 STOX2Q9P2F5 926 aaPredicted RBP12.57□□□□□ -0.4
SNX1-211ENST00000560829 LIMD1Q9UGP4 676 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 SLC22A14Q9Y267 594 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 SERTM1A2A2V5 107 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 KLHL33A6NCF5 533 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 SHISA7A6NL88 538 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 SLC28A1O00337 649 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 MANBAO00462 879 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 RGS14O43566 566 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 NRP2O60462 931 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 UGDHO60701 494 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ULK1O75385 1050 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 KRT6AP02538 564 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 KRT6BP04259 564 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ACADLP28330 430 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 IMPA1P29218 277 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 KRT6CP48668 564 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ART3Q13508 389 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 INPP5AQ14642 412 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 IRF4Q15306 451 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 CCSMST1Q4G0I0 132 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 COQ5Q5HYK3 327 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 C6orf163Q5TEZ5 329 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 AGTRAPQ6RW13 159 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 UNC5DQ6UXZ4 953 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 LRRTM4Q86VH4 590 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 SNX31Q8N9S9 440 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 OR56A3Q8NH54 315 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 ASB12Q8WXK4 309 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PYCR2Q96C36 320 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PKP4Q99569 1192 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 NPAS2Q99743 824 aa12.57□□□□□ -0.4
SNX1-211ENST00000560829 PHF7Q9BWX1 381 aaPredicted RBP12.57□□□□□ -0.4
SNX1-211ENST00000560829 LGR4Q9BXB1 951 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms