RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LRIT1Q9P2V4 623 aa9□□□□□ -0.97
LDLR-210ENST00000559340 TMCO1Q9UM00 188 aa9□□□□□ -0.97
LDLR-210ENST00000559340 RUVBL2Q9Y230 463 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 WDR37Q9Y2I8 494 aa9□□□□□ -0.97
LDLR-210ENST00000559340 NFS1Q9Y697 457 aa9□□□□□ -0.97
LDLR-210ENST00000559340 SNRNP200O75643 2136 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 HMX2A2RU54 273 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 FAM221BA6H8Z2 402 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 LILRA5A6NI73 299 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 OR52A4PA6NMU1 304 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SYCE1LA8MT33 242 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 GFYI3L273 518 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 MATN2O00339 956 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SLC30A4O14863 429 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 ATP8B1O43520 1251 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 GDF9O60383 454 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 C1orf105O95561 183 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 ALDOAP04075 364 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 S100BP04271 92 aaPredicted RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 GP1BAP07359 652 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SLC35E2BP0CK96 405 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 AMD1P17707 334 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 ACP1P24666 158 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SHMT2P34897 504 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 MAGEA12P43365 314 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 MAZP56270 477 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 AP1S2P56377 157 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 GPLD1P80108 840 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 ZNF844Q08AG5 666 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 PRKAA1Q13131 559 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 ARHGAP19Q14CB8 494 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 PLCL1Q15111 1095 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 TRIP6Q15654 476 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 CDKL4Q5MAI5 379 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 ARMC6Q6NXE6 501 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 FRA10AC1Q70Z53 315 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 EFL1Q7Z2Z2 1120 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 PIWIL4Q7Z3Z4 852 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 CMC1Q7Z7K0 106 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 VRK3Q8IV63 474 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 KYQ8NBH2 561 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SPDYE1Q8NFV5 336 aaPredicted RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 OR9A1PQ8NGU1 263 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 OR10G6Q8NH81 332 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 GIMAP7Q8NHV1 300 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SCYL1Q96KG9 808 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 UBXN10Q96LJ8 280 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CCDC138Q96M89 665 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CNTNAP3BQ96NU0 1288 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CAMK1GQ96NX5 476 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SMC6Q96SB8 1091 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SLC30A3Q99726 388 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CNTNAP3Q9BZ76 1288 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 IQCGQ9H095 443 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 CENPHQ9H3R5 247 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 RDH14Q9HBH5 336 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SLC40A1Q9NP59 571 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 SCHIP1Q9P0W5 487 aaPredicted RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 SPATA7Q9P0W8 599 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 BTBD3Q9Y2F9 522 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 TDRKHQ9Y2W6 561 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 PCDHGA1Q9Y5H4 931 aa8.99□□□□□ -0.97
LDLR-210ENST00000559340 CFAP20Q9Y6A4 193 aaKnown RBP8.99□□□□□ -0.97
LDLR-210ENST00000559340 VPS13AQ96RL7 3174 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 BTN3A1O00481 513 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 DYNC1I1O14576 645 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 COPEO14579 308 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 PPM1DO15297 605 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 GLRA3O75311 464 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 RFPL1O75677 317 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 WISP3O95389 354 aaPredicted RBP8.98□□□□□ -0.97
LDLR-210ENST00000559340 EML2O95834 649 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 SYF2O95926 243 aaKnown RBP8.98□□□□□ -0.97
LDLR-210ENST00000559340 ANXA5P08758 320 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 PYGBP11216 843 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 CEACAM1P13688 526 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 CD1DP15813 335 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 CDKL1Q00532 357 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 GPS2Q13227 327 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 ZNF460Q14592 562 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 TMEM207Q6UWW9 146 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 XKR5Q6UX68 686 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 ZNF438Q7Z4V0 828 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 GLRX5Q86SX6 157 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 PIP4P1Q86T03 277 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 OOSP2Q86WS3 158 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 GPSM1Q86YR5 675 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 TCAIMQ8N3R3 496 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 OR5AR1Q8NGP9 310 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 RHEBL1Q8TAI7 183 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 IFI44Q8TCB0 444 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 LCN9Q8WX39 176 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 PATE1Q8WXA2 126 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 KIAA1191Q96A73 305 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 SLC22A18Q96BI1 424 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 NXNL1Q96CM4 212 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 PGM2Q96G03 612 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 ABCG4Q9H172 646 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 SRMSQ9H3Y6 488 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms