RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 AKIP1Q9NQ31 210 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 ANKMY1Q9P2S6 941 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 PCTPQ9UKL6 214 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 TYW5A2RUC4 315 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 NOTOA8MTQ0 251 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 M0QZ92 97 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TSC22D2O75157 780 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 IFI30P13284 250 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TGM1P22735 817 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 HK3P52790 923 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 RAB15P59190 212 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TPRG1LQ5T0D9 272 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 DLEU7Q6UYE1 221 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 OR10T2Q8NGX3 314 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 PTCD2Q8WV60 388 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 KIAA1191Q96A73 305 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 POLR1EQ9GZS1 481 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 ZNF490Q9ULM2 529 aaPredicted RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 PCDHGA10Q9Y5H3 936 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 FGF10O15520 208 aaPredicted RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 ONECUT3O60422 494 aaPredicted RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 MSH3P20585 1137 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 STC1P52823 247 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 PWP1Q13610 501 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 ATAD1Q8NBU5 361 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 KCNN1Q92952 543 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 SEPT5Q99719 369 aaPredicted RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 COPS4Q9BT78 406 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 OR51E2Q9H255 320 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TRPV5Q9NQA5 729 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 ABCC13Q9NSE7 274 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 SMPD4Q9NXE4 827 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TESMINQ9Y4I5 508 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 FAM47E-STBD1D6RA91 191 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 CSF2P04141 144 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 PGRP06401 933 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 FGF4P08620 206 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 RPS12P25398 132 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 AIF1P55008 147 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 CARD16Q5EG05 197 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 STX19Q8N4C7 294 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TSGA13Q96PP4 275 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 SMAD5Q99717 465 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 ZYG11BQ9C0D3 744 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TFB2MQ9H5Q4 396 aaKnown RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 OSER1Q9NX31 292 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 MOSPD1Q9UJG1 213 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 GPSM3Q9Y4H4 160 aa11.11□□□□□ -0.63
LDLR-208ENST00000558518 TRIP12Q14669 1992 aaPredicted RBP11.11□□□□□ -0.63
LDLR-208ENST00000558518 VPS4BO75351 444 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GRK3P35626 688 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 CSRP3P50461 194 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 SMARCB1Q12824 385 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GTF2H2Q13888 395 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ZNF404Q494X3 552 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 SPANXN2Q5MJ10 180 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 CACHD1Q5VU97 1274 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 AGAP7PQ5VUJ5 663 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 LAIR1Q6GTX8 287 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 FBXL22Q6P050 247 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GTF2H2CQ6P1K8 395 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 FAM151BQ6UXP7 276 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 TRIM48Q8IWZ4 208 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 RIMKLAQ8IXN7 391 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 TCAIMQ8N3R3 496 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 TTC9BQ8N6N2 239 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 OR5K1Q8NHB7 308 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ZNF486Q96H40 463 aaPredicted RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 EGLN2Q96KS0 407 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 LOC110117498-PIK3R3F6TDL0 507 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ULK1O75385 1050 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 KCNK2O95069 426 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 PKMP14618 531 aaKnown RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 S100A3P33764 101 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 LIPAP38571 399 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 CREMQ03060 361 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 PRSS36Q5K4E3 855 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 UBXN11Q5T124 520 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ARMC4Q5T2S8 1044 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 LAIR2Q6ISS4 152 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 BEND5Q7L4P6 421 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GOLGA7Q7Z5G4 137 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ITPKCQ96DU7 683 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 APOL4Q9BPW4 351 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 CINPQ9BW66 212 aaPredicted RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 PLSCR3Q9NRY6 295 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 DNMT3BQ9UBC3 853 aaKnown RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 ST3GAL5Q9UNP4 418 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ARL5CA6NH57 179 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 C2orf81A6NN90 581 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 CCL23P55773 120 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GALNT1Q10472 559 aaPredicted RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 TIGD6Q17RP2 521 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 RUNDC3AQ59EK9 446 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 SNAP47Q5SQN1 464 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 ALKAL1Q6UXT8 129 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 PTRH1Q86Y79 214 aaKnown RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 LYSMD2Q8IV50 215 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 SLC44A2Q8IWA5 706 aaPredicted RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 MFSD4AQ8N468 514 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms