RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SLC7A5P2Q9GIP4 190 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 TFB2MQ9H5Q4 396 aaKnown RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 CHRAC1Q9NRG0 131 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 SOHLH2Q9NX45 425 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 UTP6Q9NYH9 597 aaKnown RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 OR6C2Q9NZP2 312 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 MAD1L1Q9Y6D9 718 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 DCHS1Q96JQ0 3298 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 IGF2RP11717 2491 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 GSAPA4D1B5 854 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ANKRD65E5RJM6 399 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 TK2O00142 265 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CCL22O00626 93 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 NDUFAB1O14561 156 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 GPR39O43194 453 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 AHCYL1O43865 530 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 COQ9O75208 318 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 VAPBO95292 243 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 HBQ1P09105 142 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 HGFP14210 728 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 BRAFP15056 766 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CDH3P22223 829 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 GCKP35557 465 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SOX11P35716 441 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 RPS6KA3P51812 740 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ADARP55265 1226 aaKnown RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 CALCOCO2Q13137 446 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 KCNJ11Q14654 390 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 MORF4L2Q15014 288 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 TAF1BQ53T94 588 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 FAM182AQ5T1J6 154 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PAPD7Q5XG87 772 aaKnown RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 NEPROQ6NW34 567 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 DNAJC14Q6Y2X3 702 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 AMIGO1Q86WK6 493 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SFTPA2Q8IWL1 248 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 NLGN4XQ8N0W4 816 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CLDN19Q8N6F1 224 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 NLGN4YQ8NFZ3 816 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 GPR150Q8NGU9 434 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 LRRC39Q96DD0 335 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 STAMBPL1Q96FJ0 436 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 MS4A14Q96JA4 679 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CATSPER2Q96P56 530 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 C17orf62Q9BQA9 187 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ARHGAP9Q9BRR9 750 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 FAM114A2Q9NRY5 505 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 C1GALT1Q9NS00 363 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 TREX1Q9NSU2 369 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SCHIP1Q9P0W5 487 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 PCYOX1Q9UHG3 505 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 LNPEPQ9UIQ6 1025 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SLC39A10Q9ULF5 831 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 WDR37Q9Y2I8 494 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PCDHB3Q9Y5E6 796 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PCYT1BQ9Y5K3 369 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 RPS6KL1Q9Y6S9 549 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PLXNB3Q9ULL4 1909 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 OR6C74A6NCV1 312 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 USP1O94782 785 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CD63P08962 238 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 FGF3P11487 239 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 NELFEP18615 380 aaKnown RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 PGAM1P18669 254 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ITIH1P19827 911 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 MPSTP25325 297 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ATP5DP30049 168 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 HSD17B2P37059 387 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ARSDP51689 593 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 EIF3BP55884 814 aaKnown RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 GNGT1P63211 74 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 HSPA14Q0VDF9 509 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 LONRF1Q17RB8 773 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP3-208ENST00000558285 PLEKHS1Q5SXH7 462 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ZNF574Q6ZN55 896 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 FAM83HQ6ZRV2 1179 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 FAM92BQ6ZTR7 304 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CEP128Q6ZU80 1094 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 DCUN1D3Q8IWE4 304 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PALM2Q8IXS6 379 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PIANPQ8IYJ0 282 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 GPR135Q8IZ08 494 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 CACNA2D3Q8IZS8 1091 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 PRR7Q8TB68 274 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 KLHL6Q8WZ60 621 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 RAD51AP1Q96B01 352 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ZNF669Q96BR6 464 aaPredicted RBP8.43□□□□□ -1.06
USP3-208ENST00000558285 WBP1Q96G27 269 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 RMDN2Q96LZ7 410 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 ULBP3Q9BZM4 244 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 OR52A5Q9H2C5 316 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SYBUQ9NX95 663 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 KLHL42Q9P2K6 505 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 SERTAD3Q9UJW9 196 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 KCND3Q9UK17 655 aa8.43□□□□□ -1.06
USP3-208ENST00000558285 URB1O60287 2271 aaKnown RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 DNAH14Q0VDD8 3507 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ASXL3Q9C0F0 2248 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 PIPSLA2A3N6 862 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms