RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 FADDQ13158 208 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 ABRAXAS2Q15018 415 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 BCL2A1Q16548 175 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 HIST2H2ACQ16777 129 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-232ENST00000557487 FAM174BQ3ZCQ3 159 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 C10orf120Q5SQS8 335 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 LRIF1Q5T3J3 769 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 PSAPL1Q6NUJ1 521 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 TUBA3EQ6PEY2 450 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 PLEKHG7Q6ZR37 379 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 SERINC5Q86VE9 423 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 PIANPQ8IYJ0 282 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 ASPSCR1Q9BZE9 553 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 P2RY12Q9H244 342 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 KCNH6Q9H252 994 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 ATP13A3Q9H7F0 1226 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 IPPKQ9H8X2 491 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 SCUBE2Q9NQ36 999 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 PAK1IP1Q9NWT1 392 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-232ENST00000557487 C1orf109Q9NX04 203 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 TRPS1Q9UHF7 1281 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 SAMD4AQ9UPU9 718 aaKnown RBP15.96■□□□□ 0.15
SHMT2-232ENST00000557487 MAN2B2Q9Y2E5 1009 aa15.96■□□□□ 0.15
SHMT2-232ENST00000557487 TDRD15B5MCY1 1934 aaKnown RBP15.96■□□□□ 0.15
SHMT2-232ENST00000557487 A0A096LPI6 279 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 WNT9AO14904 365 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 FFAR2O15552 330 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 KDELR3O43731 214 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 XYLBO75191 536 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 NADKO95544 446 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-232ENST00000557487 PRLP01236 227 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 IGHA2P01877 340 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 IGFBP5P24593 272 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 CD40LGP29965 261 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 RXRGP48443 463 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 RGS4P49798 205 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 SLC35A2P78381 396 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 IL5RAQ01344 420 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 VAC14Q08AM6 782 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 CDC20Q12834 499 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 INAQ16352 499 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 DDR2Q16832 855 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 ZRANB3Q5FWF4 1079 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 LDLRAP1Q5SW96 308 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 ZBTB46Q86UZ6 589 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 MSRB3Q8IXL7 192 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 DYNC2LI1Q8TCX1 351 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 UBTD2Q8WUN7 234 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 IPCEF1Q8WWN9 437 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-232ENST00000557487 NCLNQ969V3 563 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 ESAMQ96AP7 390 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 ZNF300Q96RE9 604 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-232ENST00000557487 TMEM165Q9HC07 324 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 PADI3Q9ULW8 664 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 SLC27A5Q9Y2P5 690 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 DOCK3Q8IZD9 2030 aa15.96■□□□□ 0.14
SHMT2-232ENST00000557487 PRMT5O14744 637 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CTSHP09668 335 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 OR4Q2P0C623 313 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 RPS3P23396 243 aaKnown RBP eCLIP15.95■□□□□ 0.144e-7■■■□□ 17.6
SHMT2-232ENST00000557487 HOXD12P35452 270 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CDH4P55283 916 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CACNG1Q06432 222 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 ABHD18Q0P651 414 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 PLEKHG6Q3KR16 790 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 TTC23LQ6PF05 361 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 SBSNQ6UWP8 590 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 MSANTD1Q6ZTZ1 278 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 PIWIL3Q7Z3Z3 882 aaKnown RBP15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CIR1Q86X95 450 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-232ENST00000557487 MIB1Q86YT6 1006 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 TMEM132CQ8N3T6 1108 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 ZFP90Q8TF47 636 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 GLMNQ92990 594 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 FAM120BQ96EK7 910 aaKnown RBP15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CPPED1Q9BRF8 314 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-232ENST00000557487 SLC29A3Q9BZD2 475 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.95■□□□□ 0.144e-7■■□□□ 13.4
SHMT2-232ENST00000557487 SP140LQ9H930 580 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 SPC25Q9HBM1 224 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 CPNE5Q9HCH3 593 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 SLC25A37Q9NYZ2 338 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 FKBPLQ9UIM3 349 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 OARD1Q9Y530 152 aa15.95■□□□□ 0.14
SHMT2-232ENST00000557487 SAGE2PA6NJ88 616 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 CLDN24A6NM45 220 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 OR1I1O60431 355 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 ITGB1P05556 798 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 CNPP09543 421 aaKnown RBP15.94■□□□□ 0.14
SHMT2-232ENST00000557487 ELNP15502 786 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 PIK3CGP48736 1102 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 TUBA1BP68363 451 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 NPTX1Q15818 432 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 ADPRMQ3LIE5 342 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 VARS2Q5ST30 1063 aaKnown RBP15.94■□□□□ 0.14
SHMT2-232ENST00000557487 CPZQ66K79 652 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 NADSYN1Q6IA69 706 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 TUBA1AQ71U36 451 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 CYP2U1Q7Z449 544 aa15.94■□□□□ 0.14
SHMT2-232ENST00000557487 HS3ST5Q8IZT8 346 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms