RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SLC30A3Q99726 388 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 XKR8Q9H6D3 395 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 LRRC4CQ9HCJ2 640 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 TAS2R13Q9NYV9 303 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 DKK4Q9UBT3 224 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 PISDQ9UG56 409 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 ICKQ9UPZ9 632 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 PSAT1Q9Y617 370 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 NFS1Q9Y697 457 aa13.2□□□□□ -0.3
SHMT2-228ENST00000557302 CHD6Q8TD26 2715 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 DMXL2Q8TDJ6 3036 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 FAM159BA6NKW6 160 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 KIF1CO43896 1103 aaKnown RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 DXOO77932 396 aaKnown RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 TNFSF15O95150 251 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 ITGA2BP08514 1039 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 RHOXF2BP0C7M4 288 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 CBSLP0DN79 551 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 ENO3P13929 434 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 POLR2CP19387 275 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 CBSP35520 551 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 CCNFP41002 786 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 MLLT3P42568 568 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 PPP1CAP62136 330 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 ILF2Q12905 390 aaKnown RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 KLHL38Q2WGJ6 581 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 HECTD2Q5U5R9 776 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 CACHD1Q5VU97 1274 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 FAM45BPQ6NSW5 357 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 IGF2-ASQ6U949 168 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 NEK10Q6ZWH5 1172 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 FAM45AQ8TCE6 357 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 MAGEC3Q8TD91 643 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 ZCCHC14Q8WYQ9 949 aaKnown RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 PRR11Q96HE9 360 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 RHOXF2Q9BQY4 288 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 SMYD2Q9NRG4 433 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 TXNDC16Q9P2K2 825 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 PLAGL1Q9UM63 463 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 RUVBL2Q9Y230 463 aaKnown RBP13.19□□□□□ -0.3
SHMT2-228ENST00000557302 VWA7Q9Y334 891 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 APC2O95996 2303 aa13.19□□□□□ -0.3
SHMT2-228ENST00000557302 KIF26BQ2KJY2 2108 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 GSAPA4D1B5 854 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 TLCD2A6NGC4 264 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 EIF3FO00303 357 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 BTN3A3O00478 584 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 BTN3A1O00481 513 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 PIAS1O75925 651 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 MATN4O95460 622 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 C1orf105O95561 183 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 MPC1LP0DKB6 136 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 CD9P21926 228 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 FDXRP22570 491 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 MCM3P25205 808 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ECHS1P30084 290 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 BDKRB1P46663 353 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RGS4P49798 205 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RAB28P51157 221 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 CDKN2DP55273 166 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 TIAL1Q01085 375 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 PDAP1Q13442 181 aaKnown RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 KYNUQ16719 465 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 LRRC8EQ6NSJ5 796 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ZC3HC1Q86WB0 502 aaKnown RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 FAM129CQ86XR2 697 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RELL1Q8IUW5 271 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 CTAGE3PQ8IX95 158 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 CPNE9Q8IYJ1 553 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ADGRF3Q8IZF5 1079 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 KDF1Q8NAX2 398 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 FBF1Q8TES7 1133 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 UBXN4Q92575 508 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RAD51AP1Q96B01 352 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ZNF578Q96N58 590 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 SLC46A1Q96NT5 459 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 NRTNQ99748 197 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 CPNE1Q99829 537 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RAB11FIP5Q9BXF6 653 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 RHOJQ9H4E5 214 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ZNF768Q9H5H4 540 aaKnown RBP13.18□□□□□ -0.3
SHMT2-228ENST00000557302 THSD1Q9NS62 852 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 NINJ2Q9NZG7 142 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 OR6C2Q9NZP2 312 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 POMT2Q9UKY4 750 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 ACACAQ13085 2346 aa13.18□□□□□ -0.3
SHMT2-228ENST00000557302 FAM95CA0A1B0GW59 222 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 EFCAB7A8K855 629 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 CXorf49A8MYA2 514 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-228ENST00000557302 C2orf74A8MZ97 194 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 PSIP1O75475 530 aaKnown RBP13.17□□□□□ -0.3
SHMT2-228ENST00000557302 CATP04040 527 aaKnown RBP13.17□□□□□ -0.3
SHMT2-228ENST00000557302 CAPNS1P04632 268 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 TPBGLP0DKB5 382 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 FGF3P11487 239 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-228ENST00000557302 CCL4P13236 92 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 ITIH1P19827 911 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 PKLRP30613 574 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 PHBP35232 272 aa13.17□□□□□ -0.3
SHMT2-228ENST00000557302 GP5P40197 560 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms