RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 KRT71Q3SY84 523 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 CCDC157Q569K6 752 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 SBSNQ6UWP8 590 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 LRIG3Q6UXM1 1119 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 MBOAT1Q6ZNC8 495 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 UBE2R2Q712K3 238 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-227ENST00000557269 SPRED1Q7Z699 444 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 OR4E2Q8NGC2 313 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 IL17FQ96PD4 163 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 PKP4Q99569 1192 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 SLC38A3Q99624 504 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 SLC12A9Q9BXP2 914 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 DERL2Q9GZP9 239 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 UCK1Q9HA47 277 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 PCMTD2Q9NV79 361 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 ARGLU1Q9NWB6 273 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-227ENST00000557269 TLK1Q9UKI8 766 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 ICKQ9UPZ9 632 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 PTPRZ1P23471 2315 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-227ENST00000557269 DMXL1Q9Y485 3027 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 A0A1W2PQM1 296 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 DCDC2BA2VCK2 349 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 LILRA5A6NI73 299 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 AGPSO00116 658 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 KLHL2O95198 593 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 MT-ND3P03897 115 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 C8GP07360 202 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 LTA4HP09960 611 aaKnown RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 PNLIPP16233 465 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 TYRP1P17643 537 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 KRT15P19012 456 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 NDUFS1P28331 727 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 CD1CP29017 333 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 MAPK9P45984 424 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 GLRBP48167 497 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 DUSP3P51452 185 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 CLDN6P56747 220 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 CFHR1Q03591 330 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 PPP1R3AQ16821 1122 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 TAF1BQ53T94 588 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 LRRC8EQ6NSJ5 796 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 TMPRSS9Q7Z410 1059 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 GLRX5Q86SX6 157 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 CLEC14AQ86T13 490 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 TBC1D1Q86TI0 1168 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 ISCA2Q86U28 154 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 DCUN1D3Q8IWE4 304 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 RIBC1Q8N443 379 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 C2orf73Q8N5S3 287 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 OR6C4Q8NGE1 309 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 DENND1AQ8TEH3 1009 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 ZFPM2Q8WW38 1151 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 LCN9Q8WX39 176 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 NAT6Q93015 286 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 SH3KBP1Q96B97 665 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 FOPNLQ96NB1 174 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 SLC32A1Q9H598 525 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 TFB2MQ9H5Q4 396 aaKnown RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 STN1Q9H668 368 aaKnown RBP12.45□□□□□ -0.42
SHMT2-227ENST00000557269 ZNF446Q9NWS9 450 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 KCNK4Q9NYG8 393 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 POLG2Q9UHN1 485 aa12.45□□□□□ -0.42
SHMT2-227ENST00000557269 IGHV1OR21-1A0A087WYE8 117 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 OR6C74A6NCV1 312 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 MYO1CO00159 1063 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 BTN3A3O00478 584 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SLC16A5O15375 505 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SASH3O75995 380 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 KCNK5O95279 499 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SYF2O95926 243 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 CATP04040 527 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 RPLP0P05388 317 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 CREB1P16220 341 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 TFEBP19484 476 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 CSF2RBP32927 897 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SLC26A3P40879 764 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 CCNFP41002 786 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 GPR3P46089 330 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 NOVA1P51513 510 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 ATP6V0D1P61421 351 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 PPP1CAP62136 330 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SIM1P81133 766 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 SP140Q13342 867 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 FASTKQ14296 549 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 PLCL1Q15111 1095 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 ZXDCQ2QGD7 858 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 AMZ1Q400G9 498 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 CDHR3Q6ZTQ4 885 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 USP53Q70EK8 1073 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 TRABD2AQ86V40 505 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 RBM12BQ8IXT5 1001 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 LINC01555Q8NAE3 123 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 AVL9Q8NBF6 648 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 FBXO15Q8NCQ5 510 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 OR9A1PQ8NGU1 263 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 ANKRD7Q92527 254 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 RSC1A1Q92681 617 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 KIAA1191Q96A73 305 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 RAD51AP1Q96B01 352 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms