RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CNIH3Q8TBE1 160 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 UPF1Q92900 1129 aaKnown RBP eCLIP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 PDLIM5Q96HC4 596 aaKnown RBP7.34□□□□□ -1.23
LIMA1-213ENST00000552720 OR52E6Q96RD3 313 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 INPP5KQ9BT40 448 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 TTLL2Q9BWV7 592 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 GORASP2Q9H8Y8 452 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 TMEM161AQ9NX61 479 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 DNAJB9Q9UBS3 223 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF510Q9Y2H8 683 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 PCDHB14Q9Y5E9 798 aa7.34□□□□□ -1.23
LIMA1-213ENST00000552720 C1orf232A0A0U1RR37 186 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 UPK3BL1B0FP48 263 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 UPK3BL2E5RIL1 263 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 NBNO60934 754 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 ULK1O75385 1050 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 GMNNO75496 209 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 INMTO95050 263 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 LRATO95237 230 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 GLUD1P00367 558 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 SERPINA1P01009 418 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 HMGA1P17096 107 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 TACR1P25103 407 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 HTR1BP28222 390 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 AKT1P31749 480 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 CSKP41240 450 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 NKX3-2P78367 333 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 ZXDBP98169 803 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 PLD1Q13393 1074 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 ARHGEF7Q14155 803 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 GPNMBQ14956 572 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 RUNDC3AQ59EK9 446 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 C6orf141Q5SZD1 244 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 DET1Q7L5Y6 550 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 GALNT5Q7Z7M9 940 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 TSPAN33Q86UF1 283 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 PAF1Q8N7H5 531 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 LEMD2Q8NC56 503 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 PIH1D2Q8WWB5 315 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 PPP3R2Q96LZ3 170 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 MYOCQ99972 504 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 RHNO1Q9BSD3 238 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 FUNDC2Q9BWH2 189 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 UGT2B28Q9BY64 529 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 FAM126AQ9BYI3 521 aaPredicted RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 YTHDF1Q9BYJ9 559 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 CD244Q9BZW8 370 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 CCDC90BQ9GZT6 254 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 ARMC7Q9H6L4 198 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 IL26Q9NPH9 171 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 TBC1D23Q9NUY8 699 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 OPTCQ9UBM4 332 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 WARS2Q9UGM6 360 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 AFF4Q9UHB7 1163 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 VPS51Q9UID3 782 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 MBD1Q9UIS9 605 aaPredicted RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 EIF3LQ9Y262 564 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 OARD1Q9Y530 152 aa7.34□□□□□ -1.24
LIMA1-213ENST00000552720 TNPO3Q9Y5L0 923 aaKnown RBP7.34□□□□□ -1.24
LIMA1-213ENST00000552720 CDH23Q9H251 3354 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 DYTNA2CJ06 578 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 K7EPI3 171 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TOR1BO14657 336 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 RGS14O43566 566 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 NOL3O60936 208 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CREG1O75629 220 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 DIRAS1O95057 198 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PARNO95453 639 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 BCL10O95999 233 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 FUCA1P04066 466 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GALTP07902 379 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 BCKDHAP12694 445 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CYP4B1P13584 511 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 JUNBP17275 347 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 EPORP19235 508 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 DCTP40126 519 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GNPDA1P46926 289 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 FCGRTP55899 365 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ISL1P61371 349 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 VAC14Q08AM6 782 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 NFATC2Q13469 925 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SPIDRQ14159 915 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 USP39Q53GS9 565 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ARMC12Q5T9G4 340 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 LAIR1Q6GTX8 287 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CES5AQ6NT32 575 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 RGMBQ6NW40 437 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 C16orf87Q6PH81 154 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SLC16A12Q6ZSM3 486 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 RFLNAQ6ZTI6 216 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ZSWIM9Q86XI8 627 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SNX29P2Q8IUI4 249 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CHPFQ8IZ52 775 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 APCDD1Q8J025 514 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PNPT1Q8TCS8 783 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 LZICQ8WZA0 190 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GLMNQ92990 594 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 BORCS5Q969J3 196 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 FKBP10Q96AY3 582 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SDCCAG3Q96C92 435 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms