RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 RAB40ALP0C0E4 278 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 OR56A5P0C7T3 313 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 CYP2A7P20853 494 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 RPL22P35268 128 aaKnown RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 FDFT1P37268 417 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 GABRA4P48169 554 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 CCL11P51671 97 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 CSE1LP55060 971 aaKnown RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 MLLT10P55197 1068 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 ITGA1P56199 1179 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 SEL1L2Q5TEA6 688 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 ZNF385CQ66K41 422 aaPredicted RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 FAM198BQ6UWH4 519 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 LDB1Q86U70 411 aaPredicted RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 FAM20CQ8IXL6 584 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 SYTL1Q8IYJ3 562 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 TBC1D21Q8IYX1 336 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 LMNTD1Q8N9Z9 388 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 TEX19Q8NA77 164 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 OR6P1Q8NGX9 317 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 OR4L1Q8NH43 312 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 OR5K2Q8NHB8 316 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 LKAAEAR1Q8TD35 194 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 SEC14L1Q92503 715 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 FRMD8P1Q9BZ68 369 aaPredicted RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 SPRTNQ9H040 489 aaPredicted RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 ING2Q9H160 280 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 MLXIPLQ9NP71 852 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 MARCH4Q9P2E8 410 aaPredicted RBP12.9□□□□□ -0.34
CPSF6-204ENST00000547486 POLG2Q9UHN1 485 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 TCFL5Q9UL49 500 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 RIMKLBQ9ULI2 386 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 CDYLQ9Y232 598 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 TCAF1Q9Y4C2 921 aa12.9□□□□□ -0.34
CPSF6-204ENST00000547486 SPENQ96T58 3664 aaKnown RBP12.9□□□□□ -0.35
CPSF6-204ENST00000547486 E7EQ34 232 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 QSOX1O00391 747 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 GAS8O95995 478 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 APRTP07741 180 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 PEBP1P30086 187 aaKnown RBP12.89□□□□□ -0.35
CPSF6-204ENST00000547486 SHMT2P34897 504 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 PTGIRP43119 386 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 CRADDP78560 199 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 SRSF1Q07955 248 aaKnown RBP eCLIP12.89□□□□□ -0.35
CPSF6-204ENST00000547486 RPS6KA1Q15418 735 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 DEFB110Q30KQ9 67 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 LYPLAL1Q5VWZ2 237 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 AFTPHQ6ULP2 937 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 C19orf47Q8N9M1 422 aaKnown RBP12.89□□□□□ -0.35
CPSF6-204ENST00000547486 TCTN2Q96GX1 697 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 SGSM3Q96HU1 749 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 AP1M1Q9BXS5 423 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 SNX7Q9UNH6 387 aa12.89□□□□□ -0.35
CPSF6-204ENST00000547486 MAP3K7O43318 606 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 GPC4O75487 556 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 CBSLP0DN79 551 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 CBSP35520 551 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 HSPA14Q0VDF9 509 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 GRB7Q14451 532 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 CCNG2Q16589 344 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 SYTL3Q4VX76 610 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 TMEM151BQ8IW70 566 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 SLC22A15Q8IZD6 547 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 KRT222Q8N1A0 295 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 DNAJC22Q8N4W6 341 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 C2orf73Q8N5S3 287 aaPredicted RBP12.88□□□□□ -0.35
CPSF6-204ENST00000547486 ZBTB2Q8N680 514 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 CCDC89Q8N998 374 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 LINC01555Q8NAE3 123 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■■■■■ 54.9
CPSF6-204ENST00000547486 MIB2Q96AX9 1013 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 MENTQ9BUN1 341 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 TSGA10Q9BZW7 698 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 ACSS2Q9NR19 701 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 OR6C2Q9NZP2 312 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 PAK5Q9P286 719 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 CIDEBQ9UHD4 219 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 KLHL20Q9Y2M5 609 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 SPTBP11277 2137 aa12.88□□□□□ -0.35
CPSF6-204ENST00000547486 A0A0J9YY10 115 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 ISM1B1AKI9 464 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 KRT86O43790 486 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 KLF7O75840 302 aaPredicted RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 OR2B3O76000 313 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 TMEM63AO94886 807 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 AOAHP28039 575 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 SESN2P58004 480 aaPredicted RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 FOXL2P58012 376 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 PRAMEP78395 509 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 PLOD1Q02809 727 aaPredicted RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 UBAP2LQ14157 1087 aaKnown RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 NCF4Q15080 339 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 KYNUQ16719 465 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 NADK2Q4G0N4 442 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 FASTKD1Q53R41 847 aaKnown RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 PCID2Q5JVF3 399 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 C1orf189Q5VU69 101 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 PAPD7Q5XG87 772 aaKnown RBP12.87□□□□□ -0.35
CPSF6-204ENST00000547486 NLRP9Q7RTR0 991 aa12.87□□□□□ -0.35
CPSF6-204ENST00000547486 HOOK3Q86VS8 718 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms