RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DSG2Q14126 1118 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ADGRG6Q86SQ4 1221 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 FBXO30Q8TB52 745 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 PHF12Q96QT6 1004 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 SEMA6AQ9H2E6 1030 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ALG2Q9H553 416 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ACSS2Q9NR19 701 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 LYARQ9NX58 379 aaKnown RBP7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ZNHIT2Q9UHR6 403 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF222Q9UK12 451 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 DUXAA6NLW8 204 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 E9PAM4 449 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 KMOO15229 486 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TPST1O60507 370 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 COQ9O75208 318 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 PENKP01210 267 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 IFNA7P01567 189 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TRBC1P01850 177 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 HEXAP06865 529 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ITIH1P19827 911 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SUOXP51687 545 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 HERVK_113P63132 956 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SLC25A3Q00325 362 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FUT2Q10981 343 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SEC23BQ15437 767 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TARBP2Q15633 366 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 HACD4Q5VWC8 232 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 MEDAGQ5VYS4 303 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CRTC3Q6UUV7 619 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 C17orf64Q86WR6 236 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ZC3H7AQ8IWR0 971 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 RNASE11Q8TAA1 199 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ADAMTS18Q8TE60 1221 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 C10orf82Q8WW14 230 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 PPP1R14AQ96A00 147 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TSGA13Q96PP4 275 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 COPS8Q99627 209 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ERVK-6Q9BXR3 956 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 LDAHQ9H6V9 325 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ARL8BQ9NVJ2 186 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FBXW11Q9UKB1 542 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF490Q9ULM2 529 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 POLR1DQ9Y2S0 133 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 AHDC1Q5TGY3 1603 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 NPEPPSL1A6NEC2 478 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CYP4F3Q08477 520 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 POU4F2Q12837 409 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 MERTKQ12866 999 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 DDX39BQ13838 428 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 GLYATQ6IB77 296 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 GDF6Q6KF10 455 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 MNTQ99583 582 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CLSTN3Q9BQT9 956 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 RNF39Q9H2S5 420 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CRISPLD1Q9H336 500 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TBC1D17Q9HA65 648 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 GALNT8Q9NY28 637 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FAM53CQ9NYF3 392 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 MED11Q9P086 117 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FAM198AQ9UFP1 575 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FBXO5Q9UKT4 447 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 PDE10AQ9Y233 779 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TLR6Q9Y2C9 796 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 GRIP1Q9Y3R0 1128 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 AGRPO00253 132 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TSC22D2O75157 780 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 LYNP07948 512 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TNFRSF4P43489 277 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 MED22Q15528 200 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CYS1Q717R9 158 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SCUBE3Q8IX30 993 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 HPS1Q92902 700 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CCM2Q9BSQ5 444 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TBCDQ9BTW9 1192 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ZDHHC5Q9C0B5 715 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CMTM6Q9NX76 183 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 COQ3Q9NZJ6 369 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 GNEQ9Y223 722 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CFL2Q9Y281 166 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ILVBLA1L0T0 632 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FAM159BA6NKW6 160 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ACOT7O00154 380 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TGFB1I1O43294 461 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 OR10H3O60404 316 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SMNDC1O75940 238 aaKnown RBP eCLIP7.68□□□□□ -1.183e-14■■□□□ 12.6
VPS13D-211ENST00000543710 HBQ1P09105 142 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ADH5P11766 374 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF30P17039 623 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 KIR3DL1P43629 444 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ERVK-8P63133 956 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CLCQ05315 142 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 VARS2Q5ST30 1063 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 OTUD3Q5T2D3 398 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 SLC25A24Q6NUK1 477 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 METTL2BQ6P1Q9 378 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 ALYREFQ86V81 257 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CELF6Q96J87 481 aaKnown RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 FERD3LQ96RJ6 166 aa7.68□□□□□ -1.18
VPS13D-211ENST00000543710 CDX2Q99626 313 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-211ENST00000543710 TFR2Q9UP52 801 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms