RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SLC12A9Q9BXP2 914 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 VPS11Q9H270 941 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 ARHGEF17Q96PE2 2063 aaPredicted RBP16.66■□□□□ 0.26
LIG1-204ENST00000542460 LILRA5A6NI73 299 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 GP1BAP07359 652 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 LTA4HP09960 611 aaKnown RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 COL6A2P12110 1019 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 CD1DP15813 335 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 MAP4P27816 1152 aaKnown RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 EPHA4P54764 986 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 FAM83EQ2M2I3 478 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 PERM1Q5SV97 790 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 CEP85LQ5SZL2 805 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 HDXQ7Z353 690 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 OR52E1Q8NGJ3 308 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 MCOLN3Q8TDD5 553 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ACMSDQ8TDX5 336 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 RTKNQ9BST9 563 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 TFB2MQ9H5Q4 396 aaKnown RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 PARVBQ9HBI1 364 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 NMRAL1Q9HBL8 299 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ADAMTS6Q9UKP5 1117 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 TDRKHQ9Y2W6 561 aaKnown RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 ARHGEF33A8MVX0 844 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 BTN3A1O00481 513 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 KLHL2O95198 593 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 CEACAM1P13688 526 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 CYP2A7P20853 494 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ALDH4A1P30038 563 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 BDKRB1P46663 353 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ACADVLP49748 655 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 IRF9Q00978 393 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ILKQ13418 452 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 PLCL1Q15111 1095 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 ZNF761Q86XN6 746 aaPredicted RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 CENPLQ8N0S6 344 aaPredicted RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 KCTD4Q8WVF5 259 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 LCN9Q8WX39 176 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 CCDC3Q9BQI4 270 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 IGSF5Q9NSI5 407 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 KCNK4Q9NYG8 393 aa16.65■□□□□ 0.26
LIG1-204ENST00000542460 NOVA2Q9UNW9 492 aaKnown RBP16.65■□□□□ 0.26
LIG1-204ENST00000542460 A0A1W2PPM1 405 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 CDC7O00311 574 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 ENO2P09104 434 aaPredicted RBP16.64■□□□□ 0.25
LIG1-204ENST00000542460 HIST1H2AGP0C0S8 130 aaPredicted RBP16.64■□□□□ 0.25
LIG1-204ENST00000542460 HIST1H2ADP20671 130 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 GMPRP36959 345 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 OR1D5P58170 312 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 GPLD1P80108 840 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 DLG1Q12959 904 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 GRB7Q14451 532 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.64■□□□□ 0.25
LIG1-204ENST00000542460 SPRED1Q7Z699 444 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 ADAMTSL2Q86TH1 951 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 Q8N9G6 341 aaPredicted RBP16.64■□□□□ 0.25
LIG1-204ENST00000542460 DLG3Q92796 817 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 NXNL1Q96CM4 212 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 HIST1H2AHQ96KK5 128 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 RUFY1Q96T51 708 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 HIST1H2AJQ99878 128 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 H2AFJQ9BTM1 129 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 TBC1D10AQ9BXI6 508 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 TRIM54Q9BYV2 358 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 UNKQ9C0B0 810 aaKnown RBP16.64■□□□□ 0.25
LIG1-204ENST00000542460 EPB41L1Q9H4G0 881 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 IKZF3Q9UKT9 509 aa16.64■□□□□ 0.25
LIG1-204ENST00000542460 CCDC189A1A4V9 331 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 PABPN1LA6NDY0 278 aaKnown RBP16.63■□□□□ 0.25
LIG1-204ENST00000542460 NPEPPSL1A6NEC2 478 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 CACNA1AO00555 2505 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 RGS16O15492 202 aaPredicted RBP16.63■□□□□ 0.25
LIG1-204ENST00000542460 B4GAT1O43505 415 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 TPBGLP0DKB5 382 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 PYGBP11216 843 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 ACAP2Q15057 778 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 TSNQ15631 228 aaKnown RBP16.63■□□□□ 0.25
LIG1-204ENST00000542460 CCSMST1Q4G0I0 132 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 KLC3Q6P597 504 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 KLHL35Q6PF15 583 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 SBSNQ6UWP8 590 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 CLEC14AQ86T13 490 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 LCA5Q86VQ0 697 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 RAB42Q8N4Z0 105 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 OR4E2Q8NGC2 313 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 OR9A1PQ8NGU1 263 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 OR10G6Q8NH81 332 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 KIAA1191Q96A73 305 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 TSNARE1Q96NA8 513 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 SRMSQ9H3Y6 488 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 PCMTD2Q9NV79 361 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 PDE10AQ9Y233 779 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 PCDHGA1Q9Y5H4 931 aa16.63■□□□□ 0.25
LIG1-204ENST00000542460 IGHV1OR21-1A0A087WYE8 117 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 FAM221BA6H8Z2 402 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 FOXO6A8MYZ6 492 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 GOLGA8RI6L899 631 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 MYO1CO00159 1063 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 RFPL3O75679 317 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 UBXN7O94888 489 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms