RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GFYI3L273 518 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 PPM1DO15297 605 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 DKK1O94907 266 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 FKBP9O95302 570 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 CPNE6O95741 557 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 EML2O95834 649 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 PROS1P07225 676 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ALDH4A1P30038 563 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ABRQ12979 859 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 SPIDRQ14159 915 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 MROH9Q5TGP6 573 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 WDR74Q6RFH5 385 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 XKR5Q6UX68 686 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 TIFABQ6ZNK6 161 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ADAMTSL2Q86TH1 951 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 PIM3Q86V86 326 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 OOSP2Q86WS3 158 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 CPNE9Q8IYJ1 553 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 LILRA3Q8N6C8 439 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 SPDYE1Q8NFV5 336 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 NAT14Q8WUY8 206 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 DCAKDQ8WVC6 231 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 LCN9Q8WX39 176 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ATL1Q8WXF7 558 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ISL2Q96A47 359 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 LINGO1Q96FE5 620 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 ZDHHC12Q96GR4 267 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 OLFM1Q99784 485 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 TMEM109Q9BVC6 243 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 LRRN3Q9H3W5 708 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 SRMSQ9H3Y6 488 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 PARVBQ9HBI1 364 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 NMRAL1Q9HBL8 299 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 EPHA6Q9UF33 1036 aa17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 GOLGA4Q13439 2230 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-210ENST00000540931 RASGRF2O14827 1237 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 TOX3O15405 576 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 UBXN7O94888 489 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 C1orf105O95561 183 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 FTH1P19P0C7X4 201 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 PPM1FP49593 454 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 RAB28P51157 221 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 GPR18Q14330 331 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 NAA25Q14CX7 972 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 EFTUD2Q15029 972 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 TSNAXIP1Q2TAA8 658 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 CDKL4Q5MAI5 379 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 MICALCLQ6ZW33 695 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 TMPRSS12Q86WS5 348 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 GIMAP7Q8NHV1 300 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 UHMK1Q8TAS1 419 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 EEF1AKMT1Q8WVE0 214 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 PATE1Q8WXA2 126 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 FAM136AQ96C01 138 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 MRRFQ96E11 262 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 TMEM74Q96NL1 305 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 GFM1Q96RP9 751 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 CD180Q99467 661 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 SLC12A9Q9BXP2 914 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 EPB41L4BQ9H329 900 aa17.04■□□□□ 0.32
CLSTN3-210ENST00000540931 IGHV1OR21-1A0A087WYE8 117 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 MAP3K7O43318 606 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 OPA1O60313 960 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 LTA4HP09960 611 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 TIAL1Q01085 375 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 TRA2AQ13595 282 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CYB5D1Q6P9G0 228 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CYHR1Q6ZMK1 362 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 UBE2R2Q712K3 238 aaPredicted RBP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 AMIGO1Q86WK6 493 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 VRK3Q8IV63 474 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CFAP61Q8NHU2 1237 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 HMGCLL1Q8TB92 370 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 ADAMTS14Q8WXS8 1223 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 UBXN10Q96LJ8 280 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CCDC138Q96M89 665 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 ZMYND15Q9H091 742 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 RDH14Q9HBH5 336 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 SNX15Q9NRS6 342 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 AKAP7Q9P0M2 348 aaPredicted RBP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 GALPQ9UBC7 116 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CTNNAL1Q9UBT7 734 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 CFAP20Q9Y6A4 193 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 IGF2RP11717 2491 aa17.03■□□□□ 0.32
CLSTN3-210ENST00000540931 ZFYVE26Q68DK2 2539 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 SYCE1LA8MT33 242 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 NTN3O00634 580 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 PIAS1O75925 651 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 FAM155BO75949 473 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 RPLP0P05388 317 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 CCDC166P0CW27 439 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 CCND1P24385 295 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 ABCG1P45844 678 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 CAPZBP47756 277 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 CDKL1Q00532 357 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 ANKS6Q68DC2 871 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 LRIG3Q6UXM1 1119 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 NAPRTQ6XQN6 538 aa17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 RBM44Q6ZP01 1051 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-210ENST00000540931 CEP97Q8IW35 865 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms