RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 HLA-DPB1P04440 258 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 IFNW1P05000 195 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 M6PRP20645 277 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 HK3P52790 923 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 NTRK2Q16620 822 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 C14orf28Q4W4Y0 310 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PRAMEF13Q5VWM6 474 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 FRRS1Q6ZNA5 592 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 BPHLQ86WA6 291 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 LDHDQ86WU2 507 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ATP6V0D2Q8N8Y2 350 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ABCG5Q9H222 651 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 CARS2Q9HA77 564 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 TCF7L1Q9HCS4 588 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 RANGRFQ9HD47 186 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 ARL15Q9NXU5 204 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SPO11Q9Y5K1 396 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 A8MUA0 341 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 BCAS1O75363 584 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 GATBO75879 557 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 FGFR1P11362 822 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 RPL3P39023 403 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 NDST1P52848 882 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PRKAG1P54619 331 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 POU6F2P78424 691 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 FMO1Q01740 532 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PRKCDQ05655 676 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SELPLGQ14242 412 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SEZ6Q53EL9 994 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 BCL2L15Q5TBC7 163 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 MARC1Q5VT66 337 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PAMR1Q6UXH9 720 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 WASH2PQ6VEQ5 465 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ZNF367Q7RTV3 350 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 CPNE9Q8IYJ1 553 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SDR16C5Q8N3Y7 309 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 RBPMSQ93062 196 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 LRRC58Q96CX6 371 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PBDC1Q9BVG4 233 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 VPS28Q9UK41 221 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 TRUB2O95900 331 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 TPGS1Q6ZTW0 290 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 VTCN1Q7Z7D3 282 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 NDNFQ8TB73 568 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 RPRD1AQ96P16 312 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 OR52B2Q96RD2 323 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 NFKBIZQ9BYH8 718 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 LRFN2Q9ULH4 789 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 FPGTO14772 594 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PRKAR1BP31321 381 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 MAGEA11P43364 429 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 HUNKP57058 714 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SH3PXD2AQ5TCZ1 1133 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 FAM171BQ6P995 826 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ZNF730Q6ZMV8 503 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 VASH1Q7L8A9 365 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 SMIM15Q7Z3B0 74 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 CARM1Q86X55 608 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 DCUN1D3Q8IWE4 304 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PYROXD2Q8N2H3 581 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 OR10G2Q8NGC3 310 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ZUFSPQ96AP4 578 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 RNF31Q96EP0 1072 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 PARK7Q99497 189 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 MROH8Q9H579 483 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SOX17Q9H6I2 414 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 OR2S2Q9NQN1 319 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SIGLEC16A6NMB1 481 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 CREBL2O60519 120 aaPredicted RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 GADD45GO95257 159 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ATE1O95260 518 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 GJA1P17302 382 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 TYMPP19971 482 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 G0S2P27469 103 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 CTNNB1P35222 781 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 EIF2DP41214 584 aaKnown RBP8.61□□□□□ -1.03
YBX3-208ENST00000540447 KCNC1P48547 511 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 GPR85P60893 370 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SV2CQ496J9 727 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 TMEM119Q4V9L6 283 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 KCTD9Q7L273 389 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ACBD6Q9BR61 282 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 SMOXQ9NWM0 555 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ZDHHC7Q9NXF8 308 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 IL37Q9NZH6 218 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 ASH2LQ9UBL3 628 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 TCAF1Q9Y4C2 921 aa8.61□□□□□ -1.03
YBX3-208ENST00000540447 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.6□□□□□ -1.03
YBX3-208ENST00000540447 SLC28A2O43868 658 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SCGB1D2O95969 90 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 IFNA21P01568 189 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 DBIP07108 87 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 SRPRAP08240 638 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 DLDP09622 509 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 TXNP10599 105 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 ZNF705AQ6ZN79 300 aaPredicted RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 FAM71AQ8IYT1 594 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 CNIH3Q8TBE1 160 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 C10orf90Q96M02 699 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 NUSAP1Q9BXS6 441 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms