RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TIFABQ6ZNK6 161 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 SLC9B2Q86UD5 537 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 TRABD2AQ86V40 505 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 MARCH9Q86YJ5 346 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 SPATA6LQ8N4H0 392 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 Q8N9G6 341 aaPredicted RBP12.64□□□□□ -0.39
CCDC42-202ENST00000539522 OR5K2Q8NHB8 316 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 ASB11Q8WXH4 323 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 UBXN10Q96LJ8 280 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 TSSK1BQ9BXA7 367 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 KIR3DX1Q9H7L2 352 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 UCK1Q9HA47 277 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 TAS2R13Q9NYV9 303 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 ATXN7L1Q9ULK2 861 aaPredicted RBP12.64□□□□□ -0.39
CCDC42-202ENST00000539522 PLAGL1Q9UM63 463 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 ICKQ9UPZ9 632 aa12.64□□□□□ -0.39
CCDC42-202ENST00000539522 LILRA5A6NI73 299 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 KPNA5O15131 536 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 RFPL1O75677 317 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 RFPL3O75679 317 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 MPC1LP0DKB6 136 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 HOXB3P14651 431 aaPredicted RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 PEBP1P30086 187 aaKnown RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 HALP42357 657 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 KCNC1P48547 511 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 PPP2R2AP63151 447 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 PLOD1Q02809 727 aaPredicted RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 PPP1R3AQ16821 1122 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 DHRS13Q6UX07 377 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 SH2D5Q6ZV89 423 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 NEK10Q6ZWH5 1172 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CENPLQ8N0S6 344 aaPredicted RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 LINC01555Q8NAE3 123 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 OR52E1Q8NGJ3 308 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 FLVCR1-AS1Q8TAF5 88 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 RSC1A1Q92681 617 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 ALKBH8Q96BT7 664 aaKnown RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CXorf40BQ96DE9 158 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 LINGO1Q96FE5 620 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 GPR78Q96P69 363 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 FERD3LQ96RJ6 166 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 NUDT22Q9BRQ3 303 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 HGH1Q9BTY7 390 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 UNKQ9C0B0 810 aaKnown RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CCDC68Q9H2F9 335 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 SLC32A1Q9H598 525 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 XKR8Q9H6D3 395 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CNOT10Q9H9A5 744 aaKnown RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 POPDC3Q9HBV1 291 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 IGSF5Q9NSI5 407 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 NCKIPSDQ9NZQ3 722 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 TRMT6Q9UJA5 497 aaKnown RBP12.63□□□□□ -0.39
CCDC42-202ENST00000539522 PCDHGA1Q9Y5H4 931 aa12.63□□□□□ -0.39
CCDC42-202ENST00000539522 CACNA1AO00555 2505 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 A0A1W2PNU3 283 aaPredicted RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 RHPN2P1A8MT19 583 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 EIF3FO00303 357 aaPredicted RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 CDC7O00311 574 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 BTN3A3O00478 584 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 VIPP01282 170 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 RPLP0P05388 317 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 CBSLP0DN79 551 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SLC2A4P14672 509 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 NR1D1P20393 614 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 CBSP35520 551 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SKIV2L2P42285 1042 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 GPR3P46089 330 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 RPIAP49247 311 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 RAB10P61026 200 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SQSTM1Q13501 440 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 USP10Q14694 798 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 PHKG1Q16816 387 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 TUBB8Q3ZCM7 444 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 N4BP2L1Q5TBK1 243 aaPredicted RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SBSNQ6UWP8 590 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 UNC5DQ6UXZ4 953 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 B3GNT8Q7Z7M8 397 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 TBC1D21Q8IYX1 336 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 PLD6Q8N2A8 252 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 CFAP61Q8NHU2 1237 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 NAT6Q93015 286 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 PTERQ96BW5 349 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 PDLIM5Q96HC4 596 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 PPM1MQ96MI6 270 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 IL17FQ96PD4 163 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SMC6Q96SB8 1091 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 LRRN3Q9H3W5 708 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 TFB2MQ9H5Q4 396 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 RDH14Q9HBH5 336 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SSU72Q9NP77 194 aaKnown RBP12.62□□□□□ -0.39
CCDC42-202ENST00000539522 SNX15Q9NRS6 342 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 ASF1AQ9Y294 204 aa12.62□□□□□ -0.39
CCDC42-202ENST00000539522 ANKRD12Q6UB98 2062 aa12.61□□□□□ -0.39
CCDC42-202ENST00000539522 UNC13CQ8NB66 2214 aa12.61□□□□□ -0.39
CCDC42-202ENST00000539522 A0A1W2PPM1 405 aa12.61□□□□□ -0.39
CCDC42-202ENST00000539522 TRIM49D1C9J1S8 452 aa12.61□□□□□ -0.39
CCDC42-202ENST00000539522 MYO1CO00159 1063 aa12.61□□□□□ -0.39
CCDC42-202ENST00000539522 IFRD1O00458 451 aaPredicted RBP12.61□□□□□ -0.39
CCDC42-202ENST00000539522 PRICKLE3O43900 615 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms