RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KCNMB4Q86W47 210 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 CTAGE3PQ8IX95 158 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SFRP1Q8N474 314 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 CALML6Q8TD86 181 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 NCSTNQ92542 709 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 HDAC10Q969S8 669 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 NUS1Q96E22 293 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 CERS2Q96G23 380 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 AHCYL2Q96HN2 611 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 ZNF778Q96MU6 729 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 RUFY1Q96T51 708 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 TTC1Q99614 292 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC38A3Q99624 504 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 TRIM56Q9BRZ2 755 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC25A23Q9BV35 468 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC29A3Q9BZD2 475 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 KCTD5Q9NXV2 234 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 IL17CQ9P0M4 197 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 LUZP4Q9P127 313 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 TXNDC16Q9P2K2 825 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC2A6Q9UGQ3 507 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 CD84Q9UIB8 345 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 FKBPLQ9UIM3 349 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 ENTPD4Q9Y227 616 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 IKBKGQ9Y6K9 419 aa12.2□□□□□ -0.46
CLSTN3-208ENST00000538933 SVILO95425 2214 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 GLYATL1P3A0A0U1RQE8 302 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 RGSL1A5PLK6 1076 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CCL22O00626 93 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 PFDN6O15212 129 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 INPP4BO15327 924 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CEACAM4O75871 244 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 VAPBO95292 243 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 IVLP07476 585 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ANKRD34CP0C6C1 535 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 BPIP17213 487 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 MC4RP32245 332 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 HSD17B3P37058 310 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ETV3P41162 512 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ACTR1BP42025 376 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 LEPRP48357 1165 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 SPINT3P49223 89 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ACTR1AP61163 376 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 PTSQ03393 145 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 MGAT5Q09328 741 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CBLBQ13191 982 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 KLHL38Q2WGJ6 581 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FASTKD1Q53R41 847 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 STEAP4Q687X5 459 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FBXO38Q6PIJ6 1188 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FAM151BQ6UXP7 276 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 Q6ZVL8 140 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 TAS2R42Q7RTR8 314 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 RBMXL3Q8N7X1 1067 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FBF1Q8TES7 1133 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 AP2M1Q96CW1 435 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CDKN2AIPNLQ96HQ2 116 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 WDR83Q9BRX9 315 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FAM167BQ9BTA0 163 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 SPATA16Q9BXB7 569 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 FAM83DQ9H4H8 585 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 PHPT1Q9NRX4 125 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 TREX1Q9NSU2 369 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CATSPERZQ9NTU4 200 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ZFATQ9P243 1243 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 CRLS1Q9UJA2 301 aa12.19□□□□□ -0.46
CLSTN3-208ENST00000538933 ZCWPW2A0A1B0GU75 182 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 EXOC1LA0A1B0GW35 172 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 TCRBV9S1A1TA0A576 114 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 ARHGAP10A1A4S6 786 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 DYNC1I1O14576 645 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 GOT2P00505 430 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 ABHD2P08910 425 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 H2AFXP16104 143 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 VARSP26640 1264 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 PPARGP37231 505 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 GPX6P59796 221 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 CDK3Q00526 305 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 CHAF1BQ13112 559 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 PEX6Q13608 980 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 DNASE1L3Q13609 305 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 ITGA9Q13797 1035 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC29A2Q14542 456 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 UAP1Q16222 522 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 UGT8Q16880 541 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 HSP90AA5PQ58FG0 334 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 AARS2Q5JTZ9 985 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 BEND6Q5SZJ8 279 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 SLC6A19Q695T7 634 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 RAET1GQ6H3X3 334 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 MRNIPQ6NTE8 343 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 SDCCAG8Q86SQ7 713 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 RAVER1Q8IY67 606 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 MREGQ8N565 214 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 OR13J1Q8NGT2 312 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 OR4L1Q8NH43 312 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 GDAP1Q8TB36 358 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 CT55Q8WUE5 264 aa12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 SNRNP40Q96DI7 357 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-208ENST00000538933 MRRFQ96E11 262 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms