RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 UGT2B7P16662 529 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 OTX2P32243 289 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 CSE1LP55060 971 aaKnown RBP14.25□□□□□ -0.13
VPS28-215ENST00000531924 KLF1Q13351 362 aaPredicted RBP14.25□□□□□ -0.13
VPS28-215ENST00000531924 ZNF658BQ4V348 819 aaPredicted RBP14.25□□□□□ -0.13
VPS28-215ENST00000531924 MLIPQ5VWP3 458 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 AFTPHQ6ULP2 937 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 MED25Q71SY5 747 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 TRIM73Q86UV7 250 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 TMEM102Q8N9M5 508 aaPredicted RBP14.25□□□□□ -0.13
VPS28-215ENST00000531924 GSDMBQ8TAX9 411 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 CPT1CQ8TCG5 803 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 ATG4AQ8WYN0 398 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 HDAC10Q969S8 669 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 SGSM3Q96HU1 749 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 NRTNQ99748 197 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 DESI2Q9BSY9 194 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 DHRS4Q9BTZ2 278 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 FRMD8P1Q9BZ68 369 aaPredicted RBP14.25□□□□□ -0.13
VPS28-215ENST00000531924 TXLNGQ9NUQ3 528 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 ANAPC5Q9UJX4 755 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 ZNF148Q9UQR1 794 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 PCDHGB7Q9Y5F8 929 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 PRSS21Q9Y6M0 314 aa14.25□□□□□ -0.13
VPS28-215ENST00000531924 TCRBV7S2A1N4TA0A589 114 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 GOLGA6L6A8MZA4 724 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 PEX12O00623 359 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 DPM1O60762 260 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 RPN2P04844 631 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 CD63P08962 238 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 FDFT1P37268 417 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 CD97P48960 835 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 PRAMEP78395 509 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 SRSF1Q07955 248 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS28-215ENST00000531924 KYNUQ16719 465 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 NADK2Q4G0N4 442 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 FASTKD1Q53R41 847 aaKnown RBP14.24□□□□□ -0.13
VPS28-215ENST00000531924 ZNF789Q5FWF6 425 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 C1orf189Q5VU69 101 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 FAM69BQ5VUD6 431 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 FAM198BQ6UWH4 519 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 NAPRTQ6XQN6 538 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 MICALCLQ6ZW33 695 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 NLRP9Q7RTR0 991 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 CCDC89Q8N998 374 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 OR5K2Q8NHB8 316 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 ADAMTS17Q8TE56 1095 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 IP6K3Q96PC2 410 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 ETNK1Q9HBU6 452 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 LRRC4CQ9HCJ2 640 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 SLAMF7Q9NQ25 335 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 GPR83Q9NYM4 423 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 NDOR1Q9UHB4 597 aa14.24□□□□□ -0.13
VPS28-215ENST00000531924 A0A0J9YY10 115 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 CYSRT1A8MQ03 144 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 IGHEP01854 428 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 ADRA1DP25100 572 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 ACADLP28330 430 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 FOXN2P32314 431 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 HSPA14Q0VDF9 509 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 ATP1A4Q13733 1029 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 KIR2DS3Q14952 304 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 DEFB110Q30KQ9 67 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 DNAJC21Q5F1R6 531 aaKnown RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 AARS2Q5JTZ9 985 aaKnown RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 TSTD2Q5T7W7 516 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 TLDC1Q6P9B6 456 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 HPS6Q86YV9 775 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 RNF10Q8N5U6 811 aaKnown RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 GALNT11Q8NCW6 608 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 PPHLN1Q8NEY8 458 aaKnown RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 FDCSPQ8NFU4 85 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 OR4L1Q8NH43 312 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 CFAP61Q8NHU2 1237 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 PROKR1Q8TCW9 393 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 ASZ1Q8WWH4 475 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 HES6Q96HZ4 224 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 OR2A14Q96R47 310 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 NDC1Q9BTX1 674 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 MFRPQ9BY79 579 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 SPRTNQ9H040 489 aaPredicted RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 FAM60AQ9NP50 221 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 MLXIPLQ9NP71 852 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 RAB6BQ9NRW1 208 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 SPHK1Q9NYA1 384 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 IFT80Q9P2H3 777 aaPredicted RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 PLAGL1Q9UM63 463 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 SRPK3Q9UPE1 567 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 PTRH2Q9Y3E5 179 aaKnown RBP14.23□□□□□ -0.13
VPS28-215ENST00000531924 NBASA2RRP1 2371 aa14.23□□□□□ -0.13
VPS28-215ENST00000531924 PTPN13Q12923 2485 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 SLC5A10A0PJK1 596 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 BHMG1C9JSJ3 638 aaPredicted RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 ZSCAN9O15535 394 aaPredicted RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 LIASO43766 372 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 OR1I1O60431 355 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 AGFG2O95081 481 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 GOT2P00505 430 aaKnown RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 ALPPP05187 535 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms