RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SLCO2A1Q92959 643 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 SLC45A3Q96JT2 553 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 IL17FQ96PD4 163 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 ZPBPQ9BS86 351 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 ULBP3Q9BZM4 244 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 SRMSQ9H3Y6 488 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 C1GALT1Q9NS00 363 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 FGF21Q9NSA1 209 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 WDR70Q9NW82 654 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 ACTR10Q9NZ32 417 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 ASF1AQ9Y294 204 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 HEBP2Q9Y5Z4 205 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 RPS6KL1Q9Y6S9 549 aa10.32□□□□□ -0.76
CD44-227ENST00000528086 MDC1Q14676 2089 aaKnown RBP10.31□□□□□ -0.76
CD44-227ENST00000528086 TENM4Q6N022 2769 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 FAM237BA0A1B0GVD1 139 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 ZSCAN12O43309 604 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 NRP2O60462 931 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 ZBTB11O95625 1053 aaPredicted RBP10.31□□□□□ -0.76
CD44-227ENST00000528086 CAPN1P07384 714 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 CHRM5P08912 532 aaPredicted RBP10.31□□□□□ -0.76
CD44-227ENST00000528086 FAM87AP0C7U9 286 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 MLNP12872 115 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 MAP4P27816 1152 aaKnown RBP10.31□□□□□ -0.76
CD44-227ENST00000528086 GABRB3P28472 473 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 PKLRP30613 574 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 RORAP35398 523 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 FNTAP49354 379 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 HSPA14Q0VDF9 509 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 KYNUQ16719 465 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 PLEKHS1Q5SXH7 462 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 FAM69BQ5VUD6 431 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 ZNF385CQ66K41 422 aaPredicted RBP10.31□□□□□ -0.76
CD44-227ENST00000528086 KLHL35Q6PF15 583 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 CDHR3Q6ZTQ4 885 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 CILP2Q8IUL8 1156 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 TBC1D21Q8IYX1 336 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 CT55Q8WUE5 264 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 FAM136AQ96C01 138 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 SYNPO2LQ9H987 977 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 VPS37BQ9H9H4 285 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 PCYOX1Q9UHG3 505 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 CROTQ9UKG9 612 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 KLHL20Q9Y2M5 609 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 PCDHB11Q9Y5F2 797 aa10.31□□□□□ -0.76
CD44-227ENST00000528086 TNRC6AQ8NDV7 1962 aaKnown RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 A0A1W2PPV9 198 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 UBA6A0AVT1 1052 aaPredicted RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 GSAPA4D1B5 854 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 QSOX1O00391 747 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 IFRD1O00458 451 aaPredicted RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 KIF5CO60282 957 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 GAS8O95995 478 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 ITGB2P05107 769 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 MSL3P1P0C860 447 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 FMO4P31512 558 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 GCGRP47871 477 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 TTPAP49638 278 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 ATP1A2P50993 1020 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 ADARP55265 1226 aaKnown RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 EIF3BP55884 814 aaKnown RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 TUBB4BP68371 445 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 PTK6Q13882 451 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 TUBB2AQ13885 445 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 ACSBG2Q5FVE4 666 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 NEPROQ6NW34 567 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 SPESP1Q6UW49 350 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 C6orf15Q6UXA7 325 aaPredicted RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 PPP1R3BQ86XI6 285 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 CARFQ8N187 725 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 C2orf73Q8N5S3 287 aaPredicted RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 ESX1Q8N693 406 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.3□□□□□ -0.76
CD44-227ENST00000528086 TUBB2BQ9BVA1 445 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 TRIT1Q9H3H1 467 aaKnown RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 GPN2Q9H9Y4 310 aaPredicted RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 LHX9Q9NQ69 397 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 LATS2Q9NRM7 1088 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 RARRES3Q9UL19 164 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 CRYL1Q9Y2S2 319 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 TDRKHQ9Y2W6 561 aaKnown RBP10.3□□□□□ -0.76
CD44-227ENST00000528086 SPTA1P02549 2419 aa10.3□□□□□ -0.76
CD44-227ENST00000528086 SDR42E2A6NKP2 422 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 K7EM74 188 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 DNALI1O14645 258 aaPredicted RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 NRDCO43847 1150 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 MATN4O95460 622 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 C1orf105O95561 183 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 PRKAR1AP10644 381 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 OGNP20774 298 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 CDH3P22223 829 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 DLSTP36957 453 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 BDKRB1P46663 353 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 CLCN7P51798 805 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 PGGT1BP53609 377 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 RPS18P62269 152 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 MRPS25P82663 173 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 MPP1Q00013 466 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 NFKB2Q00653 900 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 ACY1Q03154 408 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms