RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ACACBO00763 2458 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 FAM95CA0A1B0GW59 222 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 PLD2O14939 933 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 C1QAP02745 245 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 CATP04040 527 aaKnown RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 ANKRD34CP0C6C1 535 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 MCM3P25205 808 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 TNFRSF8P28908 595 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 SPRP35270 261 aaPredicted RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 RAB28P51157 221 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 SLC12A2P55011 1212 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 IL2P60568 153 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 POU4F1Q01851 419 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 IRGCQ6NXR0 463 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 PAQR3Q6TCH7 311 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 IGF2-ASQ6U949 168 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 CYHR1Q6ZMK1 362 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 TRMT10CQ7L0Y3 403 aaKnown RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 RAB11FIP2Q7L804 512 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 PRSS42Q7Z5A4 293 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 PPM1NQ8N819 430 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 FBXO15Q8NCQ5 510 aaPredicted RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 JPH3Q8WXH2 748 aaPredicted RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 ASB11Q8WXH4 323 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 UBXN4Q92575 508 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 GATA6Q92908 595 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 TSPAN17Q96FV3 270 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 ELMO2Q96JJ3 720 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 TGM7Q96PF1 710 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 CDC42EP4Q9H3Q1 356 aaKnown RBP13.85□□□□□ -0.19
NUP54-216ENST00000514901 TMEM9Q9P0T7 183 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 LNPEPQ9UIQ6 1025 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 SLC39A10Q9ULF5 831 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 AK5Q9Y6K8 562 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 ACACAQ13085 2346 aa13.85□□□□□ -0.19
NUP54-216ENST00000514901 COL27A1Q8IZC6 1860 aaPredicted RBP13.84□□□□□ -0.19
NUP54-216ENST00000514901 C2orf74A8MZ97 194 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 ZBTB14O43829 449 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 PSIP1O75475 530 aaKnown RBP13.84□□□□□ -0.19
NUP54-216ENST00000514901 POLR2CP19387 275 aaPredicted RBP13.84□□□□□ -0.19
NUP54-216ENST00000514901 MPSTP25325 297 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 MAP4P27816 1152 aaKnown RBP13.84□□□□□ -0.19
NUP54-216ENST00000514901 HSD17B2P37059 387 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 ABCG1P45844 678 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 GFERP55789 205 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 SNAP47Q5SQN1 464 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 CACHD1Q5VU97 1274 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 KMT5CQ86Y97 462 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 CPNE9Q8IYJ1 553 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 PDLIM5Q96HC4 596 aaKnown RBP13.84□□□□□ -0.19
NUP54-216ENST00000514901 RBBP8Q99708 897 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 B3GNT4Q9C0J1 378 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 ACSS3Q9H6R3 686 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 POPDC3Q9HBV1 291 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 SYTL2Q9HCH5 934 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 SEMA5BQ9P283 1151 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 DKK4Q9UBT3 224 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 SATB2Q9UPW6 733 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 ICKQ9UPZ9 632 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 LOXL2Q9Y4K0 774 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 NFS1Q9Y697 457 aa13.84□□□□□ -0.19
NUP54-216ENST00000514901 TMEM8BA6NDV4 472 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 TLCD2A6NGC4 264 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 ZNF839A8K0R7 811 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 A8MU76 341 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 B4E171 279 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 GFYI3L273 518 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 BTN3A3O00478 584 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 RASGRF2O14827 1237 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 SLC16A5O15375 505 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 RASSF9O75901 435 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 PIAS1O75925 651 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 DXOO77932 396 aaKnown RBP13.83□□□□□ -0.2
NUP54-216ENST00000514901 ACSL3O95573 720 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 C8GP07360 202 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 JMJD7P0C870 316 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 RBMS1P29558 406 aaKnown RBP13.83□□□□□ -0.2
NUP54-216ENST00000514901 PKLRP30613 574 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 TSPAN7P41732 249 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 GABREP78334 506 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 KIR2DS3Q14952 304 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 ARHGAP19Q14CB8 494 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 C16orf72Q14CZ0 275 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 C3orf38Q5JPI3 329 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 RASGRP3Q8IV61 690 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 ADGRF3Q8IZF5 1079 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 MYO1HQ8N1T3 1032 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 NKAPQ8N5F7 415 aaKnown RBP13.83□□□□□ -0.2
NUP54-216ENST00000514901 RCBTB1Q8NDN9 531 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 OR9A1PQ8NGU1 263 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 EEF1AKMT1Q8WVE0 214 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 KLHL6Q8WZ60 621 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 ANKRD7Q92527 254 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 SLC22A18Q96BI1 424 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 GPR22Q99680 433 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 OLFM1Q99784 485 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 ZNF768Q9H5H4 540 aaKnown RBP13.83□□□□□ -0.2
NUP54-216ENST00000514901 XKR8Q9H6D3 395 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 C1GALT1Q9NS00 363 aa13.83□□□□□ -0.2
NUP54-216ENST00000514901 SPATA7Q9P0W8 599 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms