RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NPLQ9BXD5 320 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TPK1Q9H3S4 243 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 GSTK1Q9Y2Q3 226 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 USP3Q9Y6I4 520 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 NRAPQ86VF7 1730 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 MYO18AQ92614 2054 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 A0A0D9SEW6 157 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC38A8A6NNN8 435 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 LOC730098B7Z3J9 87 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ADAMDEC1O15204 470 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 XPNPEP2O43895 674 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 DIRAS1O95057 198 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ALPIP09923 528 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ARSAP15289 507 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 S100A1P23297 94 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 OXTRP30559 389 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 RPL3P39023 403 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 GRIA2P42262 883 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ITGA1P56199 1179 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CSNK2BP67870 215 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SRSF11Q05519 484 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 NAE1Q13564 534 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SETMARQ53H47 684 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CEP78Q5JTW2 689 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 LYSMD3Q7Z3D4 306 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 METTL3Q86U44 580 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CLDN19Q8N6F1 224 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF513Q8N8E2 541 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PIH1D2Q8WWB5 315 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ASZ1Q8WWH4 475 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNJ9Q92806 393 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PEX13Q92968 403 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 IGSF8Q969P0 613 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ZCCHC2Q9C0B9 1178 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 MAGEE1Q9HCI5 957 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TREX1Q9NSU2 369 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SSR3Q9UNL2 185 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 H3BMQ9 156 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PSMD11O00231 422 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CLIC1O00299 241 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ACOT8O14734 319 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 AP1G1O43747 822 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF26P17031 533 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ASMTP46597 345 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CREB5Q02930 508 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PTGR1Q14914 329 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNA10Q16322 511 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP2A13Q16696 494 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 HSF5Q4G112 596 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 OR4F3Q6IEY1 312 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 GDF6Q6KF10 455 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SNX20Q7Z614 316 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CARM1Q86X55 608 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ADGRG5Q8IZF4 528 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 METTL25Q8N6Q8 603 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 FCGR1BQ92637 280 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ISL2Q96A47 359 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 C8orf48Q96LL4 319 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 COG8Q96MW5 612 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 DCSTAMPQ9H295 470 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 MRPL17Q9NRX2 175 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 AGPAT4Q9NRZ5 378 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TOR4AQ9NXH8 423 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PEX16Q9Y5Y5 336 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 NHSQ6T4R5 1651 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PPP6CO00743 305 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 RPLP0P05388 317 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 FGF4P08620 206 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 SMIM18P0DKX4 95 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 POU2F1P14859 743 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 VBP1P61758 197 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 DNASE1L3Q13609 305 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 TIGD6Q17RP2 521 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 POM121L1PQ3SYA9 428 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PAGE3Q5JUK9 113 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 FUT10Q6P4F1 479 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 AGMOQ6ZNB7 445 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 RBM12BQ8IXT5 1001 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 OR8J3Q8NGG0 315 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 NACC2Q96BF6 587 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PYCR2Q96C36 320 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 C1QTNF1Q9BXJ1 281 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CRISPLD1Q9H336 500 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 GKN1Q9NS71 199 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 RNF11Q9Y3C5 154 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ILVBLA1L0T0 632 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MANBAO00462 879 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 KPNA3O00505 521 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ENGP17813 658 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 NSG1P42857 185 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 UGT2B15P54855 530 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 SEMG2Q02383 582 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 NDUFA5Q16718 116 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PYDC2Q56P42 97 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 UBXN11Q5T124 520 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 SPRYD7Q5W111 196 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CES4AQ5XG92 561 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CES5AQ6NT32 575 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ELMSAN1Q6PJG2 1045 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP2U1Q7Z449 544 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms