RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 ZNF696Q9H7X3 374 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 BRD7Q9NPI1 651 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 CNTNAP2Q9UHC6 1331 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 LOC100130705A0A1B0GUX0 176 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 E9PAM4 449 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 H3BUI4 141 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ATE1O95260 518 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 CAPN3P20807 821 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 GABARAPL2P60520 117 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ERVK-8P63133 956 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MPP7Q5T2T1 576 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC30A6Q6NXT4 461 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 TFAP2DQ7Z6R9 452 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF283Q8N7M2 679 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SETD6Q8TBK2 473 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MROH8Q9H579 483 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SGK2Q9HBY8 427 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 HEBP1Q9NRV9 189 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SNCAIPQ9Y6H5 919 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ISM1B1AKI9 464 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 H7C417 338 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 AURKAO14965 403 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 HOXD12P35452 270 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 MAGEA3P43357 314 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 SYNE4Q8N205 404 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF565Q8N9K5 539 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 DNERQ8NFT8 737 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 TMEM80Q96HE8 168 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 PIWIL1Q96J94 861 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 GATA5Q9BWX5 397 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ARL6Q9H0F7 186 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 PCBD2Q9H0N5 130 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 ADAMTS10Q9H324 1103 aa11.04□□□□□ -0.64
LIMCH1-208ENST00000508501 A0A1W2PPW3 197 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PRAMEF22A3QJZ6 481 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PRAF2O60831 178 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 BCAS2O75934 225 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ACVR2AP27037 513 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CRISP3P54108 245 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 HADHBP55084 474 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 BCL2A1Q16548 175 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CRY2Q49AN0 593 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PIGGQ5H8A4 983 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC22A10Q63ZE4 541 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF627Q7L945 461 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 COMMD7Q86VX2 200 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 C7orf61Q8IZ16 206 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 OTUB2Q96DC9 234 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PRICKLE1Q96MT3 831 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 OR14A2Q96R54 314 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 POP1Q99575 1024 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 WACQ9BTA9 647 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 AARSD1Q9BTE6 412 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SPATA9Q9BWV2 254 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 LHX5Q9H2C1 402 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 MKKSQ9NPJ1 570 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CNOT11Q9UKZ1 510 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 TMX2Q9Y320 296 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PTCH2Q9Y6C5 1203 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 NEO1Q92859 1461 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ADAM10O14672 748 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CDRT1O95170 752 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 TUBG1P23258 451 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 FBXL19Q6PCT2 694 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CAND1Q86VP6 1230 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 LNX1Q8TBB1 728 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 STYXQ8WUJ0 223 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CELF1Q92879 486 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 MOAP1Q96BY2 351 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF641Q96N77 438 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CNTNAP3BQ96NU0 1288 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 KATNBL1Q9H079 304 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 KCNQ5Q9NR82 932 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 TMEM45AQ9NWC5 275 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 MOCS1Q9NZB8 636 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SIX4Q9UIU6 781 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PPIEQ9UNP9 301 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 TESMINQ9Y4I5 508 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SNAPINO95295 136 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 BPNT1O95861 308 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CTSHP09668 335 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC35G4P0C7Q5 338 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CHRNB1P11230 501 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ABL2P42684 1182 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CD97P48960 835 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF132P52740 706 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 NOMO3P69849 1222 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 XKR4Q5GH76 650 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 XKR5Q6UX68 686 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PLEKHG7Q6ZR37 379 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 UBE2R2Q712K3 238 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 NUP54Q7Z3B4 507 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 MMAAQ8IVH4 418 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PIGBQ92521 554 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CXorf40BQ96DE9 158 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 KLHL15Q96M94 604 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SECISBP2Q96T21 854 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 GLOD4Q9HC38 313 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms