RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 CAVIN1Q6NZI2 390 aaKnown RBP3.22□□□□□ -1.89
LSM6-205ENST00000507449 NUP54Q7Z3B4 507 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 COMMD2Q86X83 199 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 DCP1BQ8IZD4 617 aaKnown RBP3.22□□□□□ -1.89
LSM6-205ENST00000507449 CCAR2Q8N163 923 aaKnown RBP3.22□□□□□ -1.89
LSM6-205ENST00000507449 RFLNBQ8N5W9 214 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 ANKRD13CQ8N6S4 541 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 BMPERQ8N8U9 685 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 SPATA3Q8NHX4 192 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 GRHL3Q8TE85 626 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 ZNF473Q8WTR7 871 aaKnown RBP3.22□□□□□ -1.89
LSM6-205ENST00000507449 SSMEM1Q8WWF3 244 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 SYN2Q92777 582 aaPredicted RBP3.22□□□□□ -1.89
LSM6-205ENST00000507449 EXT2Q93063 718 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 DHX58Q96C10 678 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 ALG14Q96F25 216 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 SGK494Q96LW2 274 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 KRTAP1-5Q9BYS1 174 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 RETREG1Q9H6L5 497 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 A4GALTQ9NPC4 353 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 SERINC1Q9NRX5 453 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 SLC38A7Q9NVC3 462 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 DONSONQ9NYP3 566 aa3.22□□□□□ -1.89
LSM6-205ENST00000507449 PRKNO60260 465 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 CSN3P07498 182 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 HAPLN1P10915 354 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 TCF4P15884 667 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 KRTAP5-9P26371 169 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 TLX1P31314 330 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 PTGER4P35408 488 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 DCTP40126 519 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 LHX1P48742 406 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 UBASH3AP57075 661 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 CX3CL1P78423 397 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 ZNF415Q09FC8 603 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 CA9Q16790 459 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 FAM76BQ5HYJ3 339 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 C6orf136Q5SQH8 315 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 PDSS1Q5T2R2 415 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 WBP2NLQ6ICG8 309 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 CORO6Q6QEF8 472 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 DET1Q7L5Y6 550 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 ARHGAP22Q7Z5H3 698 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 TLK2Q86UE8 772 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 NFE4Q86UQ8 179 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 PLD3Q8IV08 490 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 FOXP4Q8IVH2 680 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 MFN1Q8IWA4 741 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 IQUBQ8NA54 791 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 OR2T12Q8NG77 320 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 OR13A1Q8NGR1 328 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 OCC1Q8TAD7 63 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 IRGQQ8WZA9 623 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 CD101Q93033 1021 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 SCRN2Q96FV2 425 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 RAB3IPQ96QF0 476 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 MGME1Q9BQP7 344 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 ADPGKQ9BRR6 497 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 TRAF4Q9BUZ4 470 aaPredicted RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 TFB2MQ9H5Q4 396 aaKnown RBP3.21□□□□□ -1.9
LSM6-205ENST00000507449 DNAJC4Q9NNZ3 241 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 OLFML3Q9NRN5 406 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 ZFP57Q9NU63 452 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 TAAR2Q9P1P5 351 aa3.21□□□□□ -1.9
LSM6-205ENST00000507449 A0A087WV48 116 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 A0A1W2PRB8 838 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 OR6C76A6NM76 312 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 CLDN4O14493 209 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 SLC22A2O15244 555 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 AP5Z1O43299 807 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 BUB3O43684 328 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 TBCAO75347 108 aaKnown RBP3.2□□□□□ -1.9
LSM6-205ENST00000507449 TSHBP01222 138 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 CETPP11597 493 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 AMD1P17707 334 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 EPHA2P29317 976 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 SLC6A6P31641 620 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 PRKCIP41743 596 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 HOXA1P49639 335 aaPredicted RBP3.2□□□□□ -1.9
LSM6-205ENST00000507449 ASCL1P50553 236 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 DLX5P56178 289 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 RBP5P82980 135 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 ITGA7Q13683 1181 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 MPP7Q5T2T1 576 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 KRTAP5-1Q6L8H4 278 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 KIAA1161Q6NSJ0 714 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 ABI3BPQ7Z7G0 1075 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 EXOC3L1Q86VI1 746 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 TMEM139Q8IV31 216 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 FAM219AQ8IW50 185 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 CFAP206Q8IYR0 622 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 TTC30BQ8N4P2 665 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 MAB21L3Q8N8X9 362 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 KLHDC9Q8NEP7 349 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 OR11H4Q8NGC9 324 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 GOT1L1Q8NHS2 421 aaPredicted RBP3.2□□□□□ -1.9
LSM6-205ENST00000507449 HSD17B8Q92506 261 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 MOB3AQ96BX8 217 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 SLC47A1Q96FL8 570 aa3.2□□□□□ -1.9
LSM6-205ENST00000507449 ST6GAL2Q96JF0 529 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms