RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CWF19L1Q69YN2 538 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 SLC2A7Q6PXP3 512 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 DLEU7Q6UYE1 221 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 MSANTD1Q6ZTZ1 278 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 UBE2R2Q712K3 238 aaPredicted RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 SATL1Q86VE3 508 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 CBR4Q8N4T8 237 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 TSPAN14Q8NG11 270 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 OR52E4Q8NGH9 312 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 TFAP2CQ92754 450 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 RPL10LQ96L21 214 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 ADI1Q9BV57 179 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 SLC46A2Q9BY10 475 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 UGT2B28Q9BY64 529 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 BRD9Q9H8M2 597 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 CLK4Q9HAZ1 481 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 SLC24A3Q9HC58 644 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 INTS7Q9NVH2 962 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 PTTG2Q9NZH5 202 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 CLEC4EQ9ULY5 219 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 IRAK3Q9Y616 596 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 PLXNA2O75051 1894 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 PTPRSQ13332 1948 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 COL6A3P12111 3177 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 SERTM1A2A2V5 107 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 H3BNH8 94 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 SOCS2O14508 198 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 PGM3O95394 542 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 TFAP2AP05549 437 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 UGT2B4P06133 528 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 C1SP09871 688 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 TCF3P15923 654 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 ZNF23P17027 643 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 CKMT2P17540 419 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 MYF6P23409 242 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 HNRNPFP52597 415 aaKnown RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 PTSQ03393 145 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 BOP1Q14137 746 aaKnown RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 MAPKAPK3Q16644 382 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 C18orf21Q32NC0 220 aaPredicted RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 ATP13A5Q4VNC0 1218 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 RFTN2Q52LD8 501 aaPredicted RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 GLYATQ6IB77 296 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 IYDQ6PHW0 289 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 SPDYE1Q8NFV5 336 aaPredicted RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 HCAR2Q8TDS4 363 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 HERVK_113Q902F9 699 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 IRF7Q92985 503 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 LRIG1Q96JA1 1093 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 SLC29A1Q99808 456 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 BBS2Q9BXC9 721 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 MTIF3Q9H2K0 278 aaKnown RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 ACTL8Q9H568 366 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 ELOVL6Q9H5J4 265 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 CLMPQ9H6B4 373 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 RMND5AQ9H871 391 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 GORASP2Q9H8Y8 452 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 DUS2Q9NX74 493 aaKnown RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 B4GALT6Q9UBX8 382 aa11.71□□□□□ -0.53
NUP54-202ENST00000502850 ZFC3H1O60293 1989 aaKnown RBP11.71□□□□□ -0.53
NUP54-202ENST00000502850 TSPAN11A1L157 253 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 LOC730098B7Z3J9 87 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 NEDD8-MDP1E9PL57 170 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 SLC9A3R1O14745 358 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 GSTA4O15217 222 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 UGDHO60701 494 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 SEC22BO75396 215 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 ERN1O75460 977 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 RAP2AP10114 183 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 MTHFD1P11586 935 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 ATP1B2P14415 290 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 PTPN2P17706 415 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 POLR2EP19388 210 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 GGT1P19440 569 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 LHCGRP22888 699 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 OXTRP30559 389 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 CCR7P32248 378 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 CA5AP35218 305 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 CTSOP43234 321 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 VASPP50552 380 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 CHRNB3Q05901 458 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 MERTKQ12866 999 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 KIAA0040Q15053 153 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 DPY19L3Q6ZPD9 716 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 TMCO2Q7Z6W1 182 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 RAVER1Q8IY67 606 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 LIX1Q8N485 282 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 TRIML2Q8N7C3 387 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 OR2T12Q8NG77 320 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 ITFG1Q8TB96 612 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 MCOLN3Q8TDD5 553 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 ATL1Q8WXF7 558 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 CLP1Q92989 425 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 SDCCAG3Q96C92 435 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 BIRC7Q96CA5 298 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 CCDC97Q96F63 343 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 PPM1MQ96MI6 270 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 TMEM74Q96NL1 305 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 RDH12Q96NR8 316 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 HEPHQ9BQS7 1158 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms