RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MBOAT4Q96T53 435 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CLPBQ9H078 707 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LTB4R2Q9NPC1 389 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR51B4Q9Y5P0 310 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF106Q9H2Y7 1883 aaKnown RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 C2orf78A6NCI8 922 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ARHGEF15O94989 841 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SEC24AO95486 1093 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HPRP00739 348 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 INHBBP09529 407 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MBL2P11226 248 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF7P17097 686 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RHOAP61586 193 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HMGCS1Q01581 520 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CYP4F3Q08477 520 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 C16orf72Q14CZ0 275 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAM174BQ3ZCQ3 159 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ANKDD1AQ495B1 522 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ANKRD34AQ69YU3 496 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 XAF1Q6GPH4 301 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC8B1Q6J4K2 584 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DUS1LQ6P1R4 473 aaKnown RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RNF165Q6ZSG1 346 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CLEC4FQ8N1N0 589 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CLDN19Q8N6F1 224 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FBXO30Q8TB52 745 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DHRS1Q96LJ7 313 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FEM1AQ9BSK4 669 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAM126AQ9BYI3 521 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CD244Q9BZW8 370 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TOR3AQ9H497 397 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SMURF2Q9HAU4 748 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FANCEQ9HB96 536 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 COL4A6Q14031 1691 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PIKFYVEQ9Y2I7 2098 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RGS14O43566 566 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SEC14L2O76054 403 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC25A14O95258 325 aaPredicted RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PGLSO95336 258 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PRAMEF1O95521 474 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GSTM4Q03013 218 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PPIGQ13427 754 aaKnown RBP eCLIP15.74■□□□□ 0.111e-6■■■■□ 22.7
MSH5-SAPCD1-208ENST00000498473 SMU1Q2TAY7 513 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SPANXN4Q5MJ08 99 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SUSD1Q6UWL2 747 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF783Q6ZMS7 281 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 Q6ZNX1 250 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GALNT13Q8IUC8 556 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HS3ST5Q8IZT8 346 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 KRTCAP2Q8N6L1 136 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SGCDQ92629 289 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RHBDF1Q96CC6 855 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ALG14Q96F25 216 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CEP295NLQ96MC4 621 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UGT2B28Q9BY64 529 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 AMBRA1Q9C0C7 1298 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TMEM9Q9P0T7 183 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DNMT3BQ9UBC3 853 aaKnown RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DNAJB9Q9UBS3 223 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ADGRE2Q9UHX3 823 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 EIF3LQ9Y262 564 aaKnown RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 G3V2T6 193 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 K7ERQ8 282 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SCAMP3O14828 347 aaKnown RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TBL1XO60907 577 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CRHBPP24387 322 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR1D2P34982 312 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TUFMP49411 452 aaKnown RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PPP2R2BQ00005 443 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MAPKAPK3Q16644 382 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GTDC1Q4AE62 458 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RUNDC3AQ59EK9 446 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ANKRD26P1Q6NSI1 321 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRIM46Q7Z4K8 759 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 THAP5Q7Z6K1 395 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PLPP6Q8IY26 295 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LIX1Q8N485 282 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TTC16Q8NEE8 873 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PJA1Q8NG27 643 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SNX19Q92543 992 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 THAP11Q96EK4 314 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 AURKBQ96GD4 344 aaPredicted RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MYO19Q96H55 970 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 THUMPD3Q9BV44 507 aaKnown RBP15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OSBPL10Q9BXB5 764 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CERS4Q9HA82 394 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAM118AQ9NWS6 357 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MTRRQ9UBK8 725 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LIMD1Q9UGP4 676 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 VPS51Q9UID3 782 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GNPTGQ9UJJ9 305 aa15.74■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRBV5-3A0A0A0MS03 114 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRBV5-4A0A0C4DH59 114 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GOLGA8CPA6NN73 597 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 H0Y626 953 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC28A1O00337 649 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 AREL1O15033 823 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GSTA4O15217 222 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRIM16O95361 564 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UGT1A1P22309 533 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms