RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PTRH1Q86Y79 214 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 HOMEZQ8IX15 550 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 FAM110BQ8TC76 370 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 VPS35Q96QK1 796 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 MTIF3Q9H2K0 278 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 MUC13Q9H3R2 512 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 LRTM1Q9HBL6 345 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 CCM2LQ9NUG4 571 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 ASIC5Q9NY37 505 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 SNX13Q9Y5W8 968 aa20.61■□□□□ 0.89
CCDC88B-208ENST00000492980 C15orf38-AP3S2A0A0A6YYH1 394 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KRT87PA6NCN2 255 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 PABPN1LA6NDY0 278 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 GRXCR1A8MXD5 290 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KRT6AP02538 564 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KRT6BP04259 564 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ELFN1P0C7U0 828 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KRT6CP48668 564 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 CPSF6Q16630 551 aaKnown RBP eCLIP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 PTCHD3Q3KNS1 767 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 GGTA1PQ4G0N0 100 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ERAP2Q6P179 960 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 NEK5Q6P3R8 708 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 TMC5Q6UXY8 1006 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ARPINQ7Z6K5 226 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 GOLM1Q8NBJ4 401 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ASZ1Q8WWH4 475 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KCTD14Q9BQ13 255 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 FAM83CQ9BQN1 747 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 MUC22E2RYF6 1773 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 KCNE1BA0A087WTH5 132 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 TMEM202A6NGA9 273 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 PRRT4C9JH25 899 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 SLCO2B1O94956 709 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ZNF26P17031 533 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 AP1S2P56377 157 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 INPP5AQ14642 412 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 MTX3Q5HYI7 312 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 LDLRAP1Q5SW96 308 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 PRR23BQ6ZRT6 265 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 IFNEQ86WN2 208 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 HID1Q8IV36 788 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 RAVER1Q8IY67 606 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 GALNT4Q8N4A0 578 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 MARVELD2Q8N4S9 558 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 RASGEF1AQ8N9B8 481 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 GLYATL1Q969I3 302 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 EME1Q96AY2 570 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 PYCR2Q96C36 320 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ZFYVE19Q96K21 471 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 ACPTQ9BZG2 426 aa20.6■□□□□ 0.89
CCDC88B-208ENST00000492980 LAMA3Q16787 3333 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 ATG2AQ2TAZ0 1938 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 DHRS12A0PJE2 317 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 KPNA3O00505 521 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 TIPRLO75663 272 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 PDYNP01213 254 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 CA3P07451 260 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC6A11P48066 632 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 METAP1P53582 386 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 CTSCP53634 463 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 GPM6BQ13491 265 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 ACOX1Q15067 660 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 GAB4Q2WGN9 574 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC44A4Q53GD3 710 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 FAM78AQ5JUQ0 283 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 AMIGO2Q86SJ2 522 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 GALNT13Q8IUC8 556 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 LIX1Q8N485 282 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 MCOLN3Q8TDD5 553 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 AP2M1Q96CW1 435 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 MTFMTQ96DP5 389 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 Q9H521 79 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 ZFP14Q9HCL3 533 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 PDP2Q9P2J9 529 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 AP4B1Q9Y6B7 739 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 C2orf16Q68DN1 1984 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 CHD9Q3L8U1 2897 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 QSOX1O00391 747 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 SPINT1O43278 529 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 SEC22BO75396 215 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 GSTM1P09488 218 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 GSTM4Q03013 218 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 PLA2G4EQ3MJ16 856 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 CACHD1Q5VU97 1274 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 FAM109BQ6ICB4 259 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 UGT2A3Q6UWM9 527 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 ERMP1Q7Z2K6 904 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 APLFQ8IW19 511 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 NRSN1Q8IZ57 195 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 BPIFB1Q8TDL5 484 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 ZBTB18Q99592 522 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 C1orf109Q9NX04 203 aa20.59■□□□□ 0.89
CCDC88B-208ENST00000492980 TSPAN6O43657 245 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 MTHFD1P11586 935 aaKnown RBP20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 HSPA13P48723 471 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 PWP1Q13610 501 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 GRM2Q14416 872 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 SUSD1Q6UWL2 747 aa20.58■□□□□ 0.89
CCDC88B-208ENST00000492980 NPAS3Q8IXF0 933 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms