RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-206	ENST00000489142	COG1	Q8WTW3	980 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	MR1	Q95460	341 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	MAGOHB	Q96A72	148 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	FAM136A	Q96C01	138 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	CATSPER2	Q96P56	530 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	PITPNM3	Q9BZ71	974 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	TWSG1	Q9GZX9	223 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	KCNF1	Q9H3M0	494 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	ACTL8	Q9H568	366 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	FANCE	Q9HB96	536 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	TRMT1	Q9NXH9	659 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	RUVBL2	Q9Y230	463 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	CDYL	Q9Y232	598 aa		13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	HEMK1	Q9Y5R4	338 aa	Predicted RBP	13.57	□□□□□ -0.24
VTI1A-206	ENST00000489142	FER1L5	A0AVI2	2057 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	GOLGA8M	H3BSY2	632 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	PRMT5	O14744	637 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	HCRTR1	O43613	425 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	TMEM63A	O94886	807 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	MT-ND3	P03897	115 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	PEBP1	P30086	187 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	SHMT2	P34897	504 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	TTPA	P49638	278 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	MC1R	Q01726	317 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	ZIC1	Q15915	447 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	ZNF789	Q5FWF6	425 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	AARS2	Q5JTZ9	985 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	COLEC12	Q5KU26	742 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	PTRHD1	Q6GMV3	140 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	LRRC8B	Q6P9F7	803 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	CDHR3	Q6ZTQ4	885 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	HOOK3	Q86VS8	718 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	SPNS2	Q8IVW8	549 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	TBC1D21	Q8IYX1	336 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	SLC22A15	Q8IZD6	547 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	CARF	Q8N187	725 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	RASGEF1C	Q8N431	466 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	PEX13	Q92968	403 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	CLIP3	Q96DZ5	547 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	SGSM3	Q96HU1	749 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	IL17F	Q96PD4	163 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	OR2A14	Q96R47	310 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	KIFC1	Q9BW19	673 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	FAM60A	Q9NP50	221 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	ZNF71	Q9NQZ8	489 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	HOMER3	Q9NSC5	361 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	SOX13	Q9UN79	622 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	KLHL20	Q9Y2M5	609 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	JRKL	Q9Y4A0	524 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	PCDHB3	Q9Y5E6	796 aa		13.56	□□□□□ -0.24
VTI1A-206	ENST00000489142	TNRC6A	Q8NDV7	1962 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	ISM1	B1AKI9	464 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142		J3QKU1	62 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	ZNF185	O15231	689 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	GPC4	O75487	556 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	NDUFS3	O75489	264 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CREG1	O75629	220 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	APOA4	P06727	396 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CTSB	P07858	339 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CYP2A7	P20853	494 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	AOAH	P28039	575 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	FMO4	P31512	558 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	PPARG	P37231	505 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	COIL	P38432	576 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	BDKRB1	P46663	353 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	PTCHD3	Q3KNS1	767 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CTSL3P	Q5NE16	218 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CASC4	Q6P4E1	433 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CAND1	Q86VP6	1230 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	BPHL	Q86WA6	291 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	C19orf47	Q8N9M1	422 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	FLVCR1-AS1	Q8TAF5	88 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	ASZ1	Q8WWH4	475 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CPT1B	Q92523	772 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	PBK	Q96KB5	322 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	FCRL4	Q96PJ5	515 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CARD6	Q9BX69	1037 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	TSSK1B	Q9BXA7	367 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	SLC25A18	Q9H1K4	315 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	P2RY12	Q9H244	342 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CHST8	Q9H2A9	424 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	POLG2	Q9UHN1	485 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	GNPTG	Q9UJJ9	305 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	KCND3	Q9UK17	655 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142	CCDC88C	Q9P219	2028 aa		13.55	□□□□□ -0.24
VTI1A-206	ENST00000489142		F8W8V4	182 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	PGRMC1	O00264	195 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	NIPSNAP2	O75323	286 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	NR1D1	P20393	614 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	PKLR	P30613	574 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	IL10RA	Q13651	578 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	TMED2	Q15363	201 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	DNAJC21	Q5F1R6	531 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	PLEKHS1	Q5SXH7	462 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	CCDC137	Q6PK04	289 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	LINC01555	Q8NAE3	123 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	OR8K5	Q8NH50	307 aa		13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	SKA2	Q8WVK7	121 aa	Predicted RBP	13.54	□□□□□ -0.24
VTI1A-206	ENST00000489142	APOBEC4	Q8WW27	367 aa	Known RBP	13.54	□□□□□ -0.24

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