RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SYVN1Q86TM6 617 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 TWIST2Q8WVJ9 160 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 C19orf60Q96EN9 201 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 HIC2Q96JB3 615 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 ORAI3Q9BRQ5 295 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 LGR4Q9BXB1 951 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 TRIM54Q9BYV2 358 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 CD244Q9BZW8 370 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 WDR26Q9H7D7 661 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 WWOXQ9NZC7 414 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 ZNF225Q9UK10 706 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 FBXO4Q9UKT5 387 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 OR1A2Q9Y585 309 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 ST14Q9Y5Y6 855 aa13.86□□□□□ -0.19
CUX1-209ENST00000487284 SPAG17Q6Q759 2223 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SDK1Q7Z5N4 2213 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 A0A1W2PPC4 97 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 METTL12A8MUP2 240 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 FPGTO14772 594 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 MAP3K13O43283 966 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 ANXA5P08758 320 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TEAD1P28347 426 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 PRDX6P30041 224 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 PRDX3P30048 256 aaKnown RBP13.85□□□□□ -0.19
CUX1-209ENST00000487284 AKT2P31751 481 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 GGT5P36269 586 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TRIM23P36406 574 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 HSPA7P48741 367 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 RPIAP49247 311 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 KLF10Q13118 480 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SRSF5Q13243 272 aaKnown RBP13.85□□□□□ -0.19
CUX1-209ENST00000487284 GTF2H2Q13888 395 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 GTF2H3Q13889 308 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 NAA25Q14CX7 972 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 RBBP7Q16576 425 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SYTL3Q4VX76 610 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 NXNQ6DKJ4 435 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 GTF2H2CQ6P1K8 395 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 GCNT7Q6ZNI0 430 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 EFL1Q7Z2Z2 1120 aaKnown RBP13.85□□□□□ -0.19
CUX1-209ENST00000487284 TMEFF1Q8IYR6 380 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SLC22A15Q8IZD6 547 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TCAIMQ8N3R3 496 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TMEM145Q8NBT3 493 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 CADM4Q8NFZ8 388 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TMEM159Q96B96 161 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 BMFQ96LC9 184 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 LINC00615Q96LM1 132 aaPredicted RBP13.85□□□□□ -0.19
CUX1-209ENST00000487284 HSPA12BQ96MM6 686 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 KCNA7Q96RP8 456 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 TEX101Q9BY14 249 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 PCED1AQ9H1Q7 454 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 OR2AG1Q9H205 316 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SLC40A1Q9NP59 571 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 ATXN10Q9UBB4 475 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 GULP1Q9UBP9 304 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 SLCO1B1Q9Y6L6 691 aa13.85□□□□□ -0.19
CUX1-209ENST00000487284 K7EPI3 171 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 OR7A17O14581 309 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 LIN7AO14910 233 aaPredicted RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 PSIP1O75475 530 aaKnown RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 KRT16P08779 473 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 UROSP10746 265 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 CYP2A7P20853 494 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 MAPK9P45984 424 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 AP1S2P56377 157 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 FAM219BQ5XKK7 198 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 TMEM198Q66K66 360 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 MBOAT1Q6ZNC8 495 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 RINLQ6ZS11 566 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 LARP4Q71RC2 724 aaKnown RBP eCLIP13.84□□□□□ -0.191e-7■□□□□ 9.8
CUX1-209ENST00000487284 C10orf67Q8IYJ2 551 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 CHCHD4Q8N4Q1 142 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 TEX9Q8N6V9 391 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 OR52B6Q8NGF0 335 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 SKA2Q8WVK7 121 aaPredicted RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 UTP4Q969X6 686 aaKnown RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 CATSPER2Q96P56 530 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 RAB3IPQ96QF0 476 aaPredicted RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 MIPEPQ99797 713 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 BTBD10Q9BSF8 475 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 APOOQ9BUR5 198 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 TBC1D10AQ9BXI6 508 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 TUBB1Q9H4B7 451 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 PHPT1Q9NRX4 125 aaPredicted RBP13.84□□□□□ -0.19
CUX1-209ENST00000487284 MRGBPQ9NV56 204 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 ARL15Q9NXU5 204 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 TAS2R1Q9NYW7 299 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 OPTCQ9UBM4 332 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 GPR34Q9UPC5 381 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 DMTF1Q9Y222 760 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 ZNF318Q5VUA4 2279 aa13.84□□□□□ -0.19
CUX1-209ENST00000487284 C17orf113A0A1B0GUU1 675 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 MEI4A8MW99 385 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 PRAMEF26H0Y7S4 382 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 GIPC1O14908 333 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 PIP5K1BO14986 540 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 RASSF9O75901 435 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 OR4F21O95013 312 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms