RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, human

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-213	ENST00000480658	TMEM150C	B9EJG8	249 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CD3EAP	O15446	510 aa	Known RBP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	ZSCAN12	O43309	604 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	WISP1	O95388	367 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	S1PR4	O95977	384 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	MLN	P12872	115 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	ZNF28	P17035	718 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	RPS3	P23396	243 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	ACADL	P28330	430 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	OAS2	P29728	719 aa	Known RBP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	ATP5D	P30049	168 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CASR	P41180	1078 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CDKN1C	P49918	316 aa	Predicted RBP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	SNX1	Q13596	522 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	DEFB109B	Q30KR1	87 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	LRRC8B	Q6P9F7	803 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	OTOA	Q7RTW8	1153 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	LMNTD2	Q8IXW0	634 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	DSEL	Q8IZU8	1212 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	C19orf47	Q8N9M1	422 aa	Known RBP	11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CT55	Q8WUE5	264 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	DLG3	Q92796	817 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	MR1	Q95460	341 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	NACC2	Q96BF6	587 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	VPS50	Q96JG6	964 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	PBK	Q96KB5	322 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	TLR10	Q9BXR5	811 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	IL17B	Q9UHF5	180 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	KCNMB2	Q9Y691	235 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CFAP46	Q8IYW2	2715 aa		11.09	□□□□□ -0.63
CCM2-213	ENST00000480658	CDC14C	A4D256	554 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ZNF839	A8K0R7	811 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	MEN1	O00255	615 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	CEP104	O60308	925 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PHF2	O75151	1096 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	NDUFS3	O75489	264 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	SLCO2B1	O94956	709 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ESR1	P03372	595 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	NTRK1	P04629	796 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	CHRM5	P08912	532 aa	Predicted RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PIM1	P11309	404 aa	Predicted RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PDHA2	P29803	388 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	RPL22	P35268	128 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	HSPA14	Q0VDF9	509 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	KLRB1	Q12918	225 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ERV3-1	Q14264	604 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	KCNAB1	Q14722	419 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	GPR19	Q15760	415 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PLEKHS1	Q5SXH7	462 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	RAB43	Q86YS6	212 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ADGRF3	Q8IZF5	1079 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	TAB3	Q8N5C8	712 aa	Predicted RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	LILRA3	Q8N6C8	439 aa	Predicted RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	OTUD6B	Q8N6M0	293 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ANP32B	Q92688	251 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	RAD51AP1	Q96B01	352 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ABHD17A	Q96GS6	310 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	TRAPPC9	Q96Q05	1148 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	KIFC1	Q9BW19	673 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	AP1M1	Q9BXS5	423 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	XAB2	Q9HCS7	855 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	FAM114A2	Q9NRY5	505 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	TREX1	Q9NSU2	369 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PIH1D1	Q9NWS0	290 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	UTP6	Q9NYH9	597 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	SLC39A10	Q9ULF5	831 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ICK	Q9UPZ9	632 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	FARSA	Q9Y285	508 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PPP2R2C	Q9Y2T4	447 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	TDRKH	Q9Y2W6	561 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	PCDHGA9	Q9Y5G4	932 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	COL6A6	A6NMZ7	2263 aa		11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	FASN	P49327	2511 aa	Known RBP	11.08	□□□□□ -0.64
CCM2-213	ENST00000480658	ZNF462	Q96JM2	2506 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658		A0A0U1RQJ8	604 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	BTN3A3	O00478	584 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	CES2	O00748	559 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	GPC4	O75487	556 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	OR2B3	O76000	313 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	ST6GAL1	P15907	406 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	OGN	P20774	298 aa	Known RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	VARS	P26640	1264 aa	Known RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	RORA	P35398	523 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	MAGEA6	P43360	314 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	ARSF	P54793	590 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	SESN2	P58004	480 aa	Predicted RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	PRKG2	Q13237	762 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	SIX1	Q15475	284 aa	Predicted RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	TTLL9	Q3SXZ7	439 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	TCTE1	Q5JU00	501 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	UNC5A	Q6ZN44	842 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	MED25	Q71SY5	747 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	SYTL1	Q8IYJ3	562 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	TMEM102	Q8N9M5	508 aa	Predicted RBP	11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	OR5AR1	Q8NGP9	310 aa		11.07	□□□□□ -0.64
CCM2-213	ENST00000480658	CALML6	Q8TD86	181 aa		11.07	□□□□□ -0.64

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