RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 GPR22Q99680 433 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SEMA6CQ9H3T2 930 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 HRASLS2Q9NWW9 162 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 TMEM9Q9P0T7 183 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 PDP2Q9P2J9 529 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SLC39A10Q9ULF5 831 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 MTO1Q9Y2Z2 717 aaKnown RBP11.61□□□□□ -0.55
VPS13D-204ENST00000469054 MSRB2Q9Y3D2 182 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 RP1P56715 2156 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SPTBN2O15020 2390 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 SPEGQ15772 3267 aa11.61□□□□□ -0.55
VPS13D-204ENST00000469054 ZFC3H1O60293 1989 aaKnown RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 OR6C74A6NCV1 312 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 GFYI3L273 518 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 CAPN5O15484 640 aaPredicted RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PSIP1O75475 530 aaKnown RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 C9P02748 559 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ITGA2BP08514 1039 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 TPBGLP0DKB5 382 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 THRAP10827 490 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 SHMT2P34897 504 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 BDKRB1P46663 353 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 SLC12A2P55011 1212 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 GFERP55789 205 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 IL2P60568 153 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PRKAA1Q13131 559 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 CAMK2BQ13554 666 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 TRA2AQ13595 282 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 GRB7Q14451 532 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 USP10Q14694 798 aaKnown RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PHF19Q5T6S3 580 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ARMC6Q6NXE6 501 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 WDR93Q6P2C0 686 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 TMEM207Q6UWW9 146 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PIWIL4Q7Z3Z4 852 aaKnown RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 CEP97Q8IW35 865 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 UHMK1Q8TAS1 419 aaKnown RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ASB11Q8WXH4 323 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 LINGO1Q96FE5 620 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 TSPAN17Q96FV3 270 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ZDHHC12Q96GR4 267 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 CCDC74BQ96LY2 380 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 NRTNQ99748 197 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 MENTQ9BUN1 341 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 STRADBQ9C0K7 418 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 XKR8Q9H6D3 395 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 SYTL2Q9HCH5 934 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 OR6C2Q9NZP2 312 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ANGPTL2Q9UKU9 493 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PLAGL1Q9UM63 463 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 ICKQ9UPZ9 632 aa11.6□□□□□ -0.55
VPS13D-204ENST00000469054 MN1Q10571 1320 aaPredicted RBP11.6□□□□□ -0.55
VPS13D-204ENST00000469054 PIKFYVEQ9Y2I7 2098 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ARHGEF33A8MVX0 844 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 MATN2O00339 956 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 BTN3A3O00478 584 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ZBTB14O43829 449 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 TSPAN12O95859 305 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 CATP04040 527 aaKnown RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 INHBAP08476 426 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ZNF37AP17032 561 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 POLR2CP19387 275 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 MAP4P27816 1152 aaKnown RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 MSH2P43246 934 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 RAB28P51157 221 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 FOXK2Q01167 660 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 EIF3IQ13347 325 aaKnown RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 SLC29A2Q14542 456 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ZNF460Q14592 562 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 UAP1Q16222 522 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 SNAP47Q5SQN1 464 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 IRGCQ6NXR0 463 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ARHGAP22Q7Z5H3 698 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 RASGRP3Q8IV61 690 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 ADGRF3Q8IZF5 1079 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 MYO1HQ8N1T3 1032 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 FBXO15Q8NCQ5 510 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 RCBTB1Q8NDN9 531 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 SLC44A1Q8WWI5 657 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 LIN37Q96GY3 246 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 PDLIM5Q96HC4 596 aaKnown RBP11.59□□□□□ -0.55
VPS13D-204ENST00000469054 TGM7Q96PF1 710 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 CMKLR1Q99788 373 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 PARD6BQ9BYG5 372 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 EPB41L4BQ9H329 900 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 CAB39LQ9H9S4 337 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 POPDC3Q9HBV1 291 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 GPAMQ9HCL2 828 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 KLHL3Q9UH77 587 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 CIDEBQ9UHD4 219 aa11.59□□□□□ -0.55
VPS13D-204ENST00000469054 CCDC187A0A096LP49 1063 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 HMX2A2RU54 273 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 POC1B-GALNT4F8VUJ3 575 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 BTN3A1O00481 513 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 RASGRF2O14827 1237 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 HGSO14964 777 aaPredicted RBP11.58□□□□□ -0.56
VPS13D-204ENST00000469054 SLC16A5O15375 505 aa11.58□□□□□ -0.56
VPS13D-204ENST00000469054 TOX3O15405 576 aaPredicted RBP11.58□□□□□ -0.56
VPS13D-204ENST00000469054 PHGDHO43175 533 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms