RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 PRKAA2P54646 552 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 SLC12A2P55011 1212 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TAS2R39P59534 338 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 RAB10P61026 200 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 NAA20P61599 178 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 RPS21P63220 83 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 TMPRSS15P98073 1019 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 MPP1Q00013 466 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TIAL1Q01085 375 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS41-211ENST00000466017 TFF2Q03403 129 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 PDE1CQ14123 709 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 SEMA3AQ14563 771 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 USP10Q14694 798 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 PTPRRQ15256 657 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZNF284Q2VY69 593 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 CCDC153Q494R4 210 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TTC31Q49AM3 519 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZNF385BQ569K4 471 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZRANB3Q5FWF4 1079 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 FAM209AQ5JX71 171 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 LCE1DQ5T752 114 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 HECTD2Q5U5R9 776 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 KCTD16Q68DU8 428 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZNF549Q6P9A3 640 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 SERPINA9Q86WD7 417 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TRIM69Q86WT6 500 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 SRRM1Q8IYB3 904 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 PIANPQ8IYJ0 282 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 NXPE1Q8N323 547 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 SPEM1Q8N4L4 309 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 HDDC3Q8N4P3 179 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 NKAPQ8N5F7 415 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 CAMKK1Q8N5S9 505 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 AADATQ8N5Z0 425 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 DENND6BQ8NEG7 585 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 RPLP0P6Q8NHW5 317 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TCP10LQ8TDR4 215 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 CXorf40AQ8TE69 158 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 APOPT1Q96IL0 206 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZNF514Q96K75 400 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 MRGPRX1Q96LB2 322 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 UBXN10Q96LJ8 280 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 LINC00615Q96LM1 132 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 KCNC2Q96PR1 638 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 PANX3Q96QZ0 392 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 COPS8Q99627 209 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 C1QTNF1Q9BXJ1 281 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 PCED1AQ9H1Q7 454 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 CCDC68Q9H2F9 335 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 CENPHQ9H3R5 247 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TRIM39Q9HCM9 518 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 BPIFA1Q9NP55 256 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 FBXO6Q9NRD1 293 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 SNX15Q9NRS6 342 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 INTS9Q9NV88 658 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 SPATA6Q9NWH7 488 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 FBXL12Q9NXK8 326 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TAS2R13Q9NYV9 303 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 USP36Q9P275 1121 aaKnown RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 MARCH4Q9P2E8 410 aaPredicted RBP5.4□□□□□ -1.54
VPS41-211ENST00000466017 TLK1Q9UKI8 766 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TMPRSS11EQ9UL52 423 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 MED16Q9Y2X0 877 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ACOT9Q9Y305 439 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 DHRS7Q9Y394 339 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 TRAF6Q9Y4K3 522 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 HS3ST3A1Q9Y663 406 aa5.4□□□□□ -1.54
VPS41-211ENST00000466017 ZNF106Q9H2Y7 1883 aaKnown RBP5.4□□□□□ -1.55
VPS41-211ENST00000466017 MYLKQ15746 1914 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SCN8AQ9UQD0 1980 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 TRBV23OR9-2A0A075B6M9 112 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 TMEM120BA0PK00 339 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 CCDC78A2IDD5 438 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 OR51F1A6NGY5 319 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SMIM23A6NLE4 172 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 TARM1B6A8C7 271 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 GOLGA8TH3BQL2 631 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 COPEO14579 308 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 TPP1O14773 563 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 KLF11O14901 512 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 PDPK1O15530 556 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 PLIN3O60664 434 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SHOX2O60902 331 aaPredicted RBP5.39□□□□□ -1.55
VPS41-211ENST00000466017 VPS26AO75436 327 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 PIAS1O75925 651 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SNUPNO95149 360 aaKnown RBP5.39□□□□□ -1.55
VPS41-211ENST00000466017 KLHL2O95198 593 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SOD1P00441 154 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 RBP1P09455 135 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 OR56A5P0C7T3 313 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 SLC35E2BP0CK96 405 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 CBSLP0DN79 551 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 RALBP11234 206 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 C6P13671 934 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 ATP1B2P14415 290 aaPredicted RBP5.39□□□□□ -1.55
VPS41-211ENST00000466017 CHN1P15882 459 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 GABRG2P18507 467 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 UGT1A6P19224 532 aa5.39□□□□□ -1.55
VPS41-211ENST00000466017 HOXA5P20719 270 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms