RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DUSP12Q9UNI6 340 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 UPK3BL1B0FP48 263 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 UPK3BL2E5RIL1 263 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 H3BNX3 289 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF195O14628 629 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 RGS5O15539 181 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 RSL1D1O76021 490 aaKnown RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PGLSO95336 258 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ANXA4P09525 319 aaPredicted RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ALDOCP09972 364 aaKnown RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 SLC6A2P23975 617 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ERVPABLB-1P60509 514 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CYP4F2P78329 520 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CDKL1Q00532 357 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 SUSD6Q92537 303 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ISL2Q96A47 359 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 LRCH3Q96II8 777 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF382Q96SR6 550 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF576Q9H609 170 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 EXD2Q9NVH0 621 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ZDHHC3Q9NYG2 299 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 LINC00854A0A1B0GVQ3 168 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ANKDD1BA6NHY2 528 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 DRGXA6NNA5 263 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 KDM1AO60341 852 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 TULP3O75386 442 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 WASP42768 502 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 OR4D2P58180 307 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 EMX2Q04743 252 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 LAPTM4AQ15012 233 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ABRAXAS2Q15018 415 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PLEKHG6Q3KR16 790 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PAGE3Q5JUK9 113 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 INTS11Q5TA45 600 aaKnown RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 FAM219BQ5XKK7 198 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 OR4F3Q6IEY1 312 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CYP2U1Q7Z449 544 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ZCCHC7Q8N3Z6 543 aaKnown RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 DACT3Q96B18 629 aaPredicted RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 RNF38Q9H0F5 515 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 KRT84Q9NSB2 600 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CCM2LQ9NUG4 571 aaPredicted RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 SCHIP1Q9P0W5 487 aaPredicted RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 RAPGEFL1Q9UHV5 662 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 SLCO3A1Q9UIG8 710 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PCTPQ9UKL6 214 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 DGKBQ9Y6T7 804 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 LOC100506127A0A0U1RQW1 187 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 H3BN98 237 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SOCS2O14508 198 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SMAD6O43541 496 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 DIRAS1O95057 198 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SNAP29O95721 258 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 IGFBP5P24593 272 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ST13P50502 369 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ATP4BP51164 291 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 DSC1Q08554 894 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 GALNT1Q10472 559 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 LRP8Q14114 963 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 PAGE2BQ5JRK9 111 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 FAM109BQ6ICB4 259 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM220Q6QAJ8 160 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RD3Q7Z3Z2 195 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 TSPAN33Q86UF1 283 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ZDHHC21Q8IVQ6 265 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 NXPE1Q8N323 547 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 LEMD2Q8NC56 503 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 OR7A2PQ8NGA2 310 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 OR52J3Q8NH60 311 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 GPR78Q96P69 363 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CRISPLD1Q9H336 500 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SYNDIG1Q9H7V2 258 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CAPN10Q9HC96 672 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ETAA1Q9NY74 926 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 PDP1Q9P0J1 537 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 FBP2O00757 339 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 UBFD1O14562 309 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 IFNA14P01570 189 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SOD2P04179 222 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 GSTM1P09488 218 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 PABPC4LP0CB38 370 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 DDX5P17844 614 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ATF6P18850 670 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RRM2P31350 389 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 HMGCLP35914 325 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 WDR5P61964 334 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 DAG1Q14118 895 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM207Q6UWW9 146 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 TPRG1Q6ZUI0 275 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 Q6ZVL8 140 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RGL4Q8IZJ4 473 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 LILRA2Q8N149 483 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 KRTCAP2Q8N6L1 136 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 GLB1L3Q8NCI6 653 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SLC22A17Q8WUG5 538 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 MYLIPQ8WY64 445 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ARMC5Q96C12 935 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ATOH8Q96SQ7 321 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 HEPHQ9BQS7 1158 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms