RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PDIK1LQ8N165 341 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 NLGN4YQ8NFZ3 816 aaPredicted RBP18.12■□□□□ 0.49
USP39-209ENST00000458268 NKD1Q969G9 470 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 SNF8Q96H20 258 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 BIRC8Q96P09 236 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 IL17FQ96PD4 163 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 TCF12Q99081 682 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 ZPBPQ9BS86 351 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 RNF14Q9UBS8 474 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 CDYLQ9Y232 598 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 SNX24Q9Y343 169 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 NFS1Q9Y697 457 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 FAM208BQ5VWN6 2430 aa18.12■□□□□ 0.49
USP39-209ENST00000458268 LAMA5O15230 3695 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 MATN2O00339 956 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 KPNA5O15131 536 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 KDM1AO60341 852 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 GPC4O75487 556 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 RPN2P04844 631 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ERVK-10P10266 1014 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ST6GAL1P15907 406 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 PRDX3P30048 256 aaKnown RBP18.11■□□□□ 0.49
USP39-209ENST00000458268 ACY1Q03154 408 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 TTC23LQ6PF05 361 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 TMEM135Q86UB9 458 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 DTX1Q86Y01 620 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ANKMY2Q8IV38 441 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ADGRF3Q8IZF5 1079 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ZSCAN1Q8NBB4 408 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 GALNT6Q8NCL4 622 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 CALML6Q8TD86 181 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ZNF592Q92610 1267 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 SLC41A2Q96JW4 573 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 FOPNLQ96NB1 174 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 EBNA1BP2Q99848 306 aaKnown RBP18.11■□□□□ 0.49
USP39-209ENST00000458268 FAM167BQ9BTA0 163 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 B3GNT4Q9C0J1 378 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 FGF21Q9NSA1 209 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 INTS10Q9NVR2 710 aaKnown RBP18.11■□□□□ 0.49
USP39-209ENST00000458268 SPHK1Q9NYA1 384 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 GALPQ9UBC7 116 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 SLC39A10Q9ULF5 831 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 VPS9D1Q9Y2B5 631 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 ITPR1Q14643 2758 aa18.11■□□□□ 0.49
USP39-209ENST00000458268 SNRNP200O75643 2136 aaKnown RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 KRT87PA6NCN2 255 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 H3BMM5 538 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 EFSO43281 561 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 MAP3K7O43318 606 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 SPAG6O75602 509 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 TIAF1O95411 115 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 S1PR4O95977 384 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 ESR1P03372 595 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 CHRM5P08912 532 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 LIFP15018 202 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 UGT2B7P16662 529 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 IVDP26440 423 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 ELK3P41970 407 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 CUL1Q13616 776 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 COL9A2Q14055 689 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 MORF4L2Q15014 288 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 HIF1AQ16665 826 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 TAF1BQ53T94 588 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 CYB5D1Q6P9G0 228 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 TIPARPQ7Z3E1 657 aaKnown RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 IGDCC3Q8IVU1 814 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 DCUN1D3Q8IWE4 304 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 ZBTB2Q8N680 514 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 N4BP2L2Q92802 583 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 KIAA1143Q96AT1 154 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 GPN2Q9H9Y4 310 aaPredicted RBP18.1■□□□□ 0.49
USP39-209ENST00000458268 FANCEQ9HB96 536 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 SLC17A6Q9P2U8 582 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 PILRAQ9UKJ1 303 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 FAM169AQ9Y6X4 670 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 ZFHX4Q86UP3 3567 aa18.1■□□□□ 0.49
USP39-209ENST00000458268 CFAP47Q6ZTR5 3102 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 CHD6Q8TD26 2715 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 EIF4E1BA6NMX2 242 aaKnown RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 K7ENP7 123 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 SEC31AO94979 1220 aaKnown RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 NTRK1P04629 796 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 TPBGLP0DKB5 382 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 RPL21P46778 160 aaKnown RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 CARSP49589 748 aaKnown RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 ARL4CP56559 192 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 CYP4F2P78329 520 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 TSTA3Q13630 321 aaPredicted RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 IL11RAQ14626 422 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 DEFB110Q30KQ9 67 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 SPANXN3Q5MJ09 141 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 PLEKHS1Q5SXH7 462 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 ARMC3Q5W041 872 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 HIBCHQ6NVY1 386 aaPredicted RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 INO80CQ6PI98 192 aaPredicted RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 SPESP1Q6UW49 350 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 C6orf15Q6UXA7 325 aaPredicted RBP18.09■□□□□ 0.49
USP39-209ENST00000458268 UNC5DQ6UXZ4 953 aa18.09■□□□□ 0.49
USP39-209ENST00000458268 CAPN12Q6ZSI9 719 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms