RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GLB1L3Q8NCI6 653 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 STK32AQ8WU08 396 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C8orf48Q96LL4 319 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TFR2Q9UP52 801 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DGKBQ9Y6T7 804 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PSMG1O95456 288 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 HEXBP07686 556 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ALPIP09923 528 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ECT2LQ008S8 904 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 GNA12Q03113 381 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TAF1AQ15573 450 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MTX3Q5HYI7 312 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 RELL1Q8IUW5 271 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SVOPLQ8N434 492 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MCFD2Q8NI22 146 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CAPNS2Q96L46 248 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NECAB3Q96P71 396 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ACBD6Q9BR61 282 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZSCAN5AQ9BUG6 496 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 FN3KQ9H479 309 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NOL11Q9H8H0 719 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 E2F3O00716 465 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CFL1P23528 166 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 S100A7P31151 101 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HOXC8P31273 242 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SCN1BQ07699 218 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TEX44Q53QW1 395 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SLC26A9Q7LBE3 791 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 LINC00471Q8N535 108 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 FAM46DQ8NEK8 389 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MIPEPQ99797 713 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 UCK2Q9BZX2 261 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CDT1Q9H211 546 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 L2HGDHQ9H9P8 463 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ITM2CQ9NQX7 267 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ASB6Q9NWX5 421 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 EIF3KQ9UBQ5 218 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HES2Q9Y543 173 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 FMN2Q9NZ56 1722 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 UBR1Q8IWV7 1749 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 WNT9AO14904 365 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 NRP2O60462 931 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CCNCP24863 283 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TIE1P35590 1138 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MPP2Q14168 576 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 BORAQ6PGQ7 559 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 KREMEN2Q8NCW0 462 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 KCTD4Q8WVF5 259 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 STRA6Q9BX79 667 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 POLR3BQ9NW08 1133 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 NENFQ9UMX5 172 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PLEKHA6Q9Y2H5 1048 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHA2Q9Y5H9 948 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MROH2AA6NES4 1674 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 B8ZZF3 427 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MID1O15344 667 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PFKMP08237 780 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 RBMS1P29558 406 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CHRNB4P30926 498 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PBX3P40426 434 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SLC5A3P53794 718 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CRISP3P54108 245 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HERV-K104P61576 105 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 GRIK5Q16478 980 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF792Q3KQV3 632 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SPIN4Q56A73 249 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 RNASEH2BQ5TBB1 312 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SDHAF4Q5VUM1 108 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF627Q7L945 461 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 LINGO2Q7L985 606 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MAPK15Q8TD08 544 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ATG10Q9H0Y0 220 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PPP1R14DQ9NXH3 145 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 P2RX2Q9UBL9 471 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ADGRB2O60241 1585 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CTDNEP1O95476 244 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CALCAP01258 141 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 GP1BBP13224 206 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 FOSL2P15408 326 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 GDI1P31150 447 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PTGER3P43115 390 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 RFX5P48382 616 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TIGD5Q53EQ6 642 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM35AQ53FP2 167 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 LACTB2Q53H82 288 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SMYD5Q6GMV2 418 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PDE12Q6L8Q7 609 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MBOAT1Q6ZNC8 495 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 C12orf29Q8N999 325 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 DIRAS2Q96HU8 199 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 OSBPL2Q9H1P3 480 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SLC6A15Q9H2J7 730 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SEC61A2Q9H9S3 476 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TAS2R14Q9NYV8 317 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TRIP11Q15643 1979 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CYP3A7-CYP3A51PA0A087WV96 503 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HTR3EA5X5Y0 456 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 A6NCN8 305 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MAGEB17A8MXT2 336 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 KRT36O76013 467 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms