RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NPEPPSL1A6NEC2 478 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 ASB14A6NK59 587 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 H3BQ06 376 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 CAPN5O15484 640 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 ATXN1LP0C7T5 689 aaKnown RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 P2RX3P56373 397 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 TSPY1Q01534 308 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 DSC2Q02487 901 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 ARHGAP1Q07960 439 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 LRRC26Q2I0M4 334 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 RFTN2Q52LD8 501 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 MARCH8Q5T0T0 291 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 GJC2Q5T442 439 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 MRNIPQ6NTE8 343 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 LETMD1Q6P1Q0 360 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 VN1R5Q7Z5H4 357 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 SNX20Q7Z614 316 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 PLPP6Q8IY26 295 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 TTC29Q8NA56 475 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 NCLNQ969V3 563 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 PYURFQ96I23 114 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 ZNF382Q96SR6 550 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 HBEGFQ99075 208 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 NT5MQ9NPB1 228 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 TBC1D24Q9ULP9 559 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 LOC105371267A0A1B0GV96 52 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 GOLGA8CPA6NN73 597 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 PCDHGA12O60330 932 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 PAGE1O75459 146 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 CRYZL1O95825 349 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ZNF286BP0CG31 522 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 KCNE1P15382 129 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ENDOUP21128 410 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 GMPSP49915 693 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 HK3P52790 923 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 STC1P52823 247 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 IL1RL1Q01638 556 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 BCL7AQ4VC05 210 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RUNDC3AQ59EK9 446 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 XKR4Q5GH76 650 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 NOTUMQ6P988 496 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 SAMD7Q7Z3H4 446 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 SLC46A3Q7Z3Q1 461 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 CCDC190Q86UF4 302 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 C11orf74Q86VG3 221 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 PEX5LQ8IYB4 626 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 PHACTR4Q8IZ21 702 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 C10orf111Q8N326 155 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 OR10Q1Q8NGQ4 319 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RNF170Q96K19 258 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 SLA2Q9H6Q3 261 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RNF167Q9H6Y7 350 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RASSF1Q9NS23 344 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RAPGEFL1Q9UHV5 662 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 EIF2B4Q9UI10 523 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 FAM50BQ9Y247 325 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 GINS2Q9Y248 185 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 PEX16Q9Y5Y5 336 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 GBF1Q92538 1859 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 TRBV5-3A0A0A0MS03 114 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 MYBPHLA2RUH7 354 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 E9PQ18 207 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 CCRL2O00421 344 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RECQL5O94762 991 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 PRSS56P0CW18 603 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 HOXB6P17509 224 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 OGNP20774 298 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 ARL1P40616 181 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 GZMMP51124 257 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 C19orf57Q0VDD7 668 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 STARD3Q14849 445 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 NR6A1Q15406 480 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 TBCEQ15813 527 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 TYSND1Q2T9J0 566 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 SOWAHCQ53LP3 525 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 CALHM3Q86XJ0 350 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ZDHHC21Q8IVQ6 265 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 REM2Q8IYK8 340 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 PSD4Q8NDX1 1056 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 SUN5Q8TC36 379 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 DNASE1L2Q92874 299 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 KLRG1Q96E93 195 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 DMRTB1Q96MA1 342 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RNF39Q9H2S5 420 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ZFP14Q9HCL3 533 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 TRMT13Q9NUP7 481 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 PAQR5Q9NXK6 330 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 ABCG2Q9UNQ0 655 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 GRIP1Q9Y3R0 1128 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ARL5AQ9Y689 179 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 TNS1Q9HBL0 1735 aaKnown RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 A0A096LPI6 279 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 A8MV72 311 aaPredicted RBP10.48□□□□□ -0.73
USP54-204ENST00000422491 FAM220BPB1ANY3 271 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ERVH48-1M5A8F1 160 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 ARVCFO00192 962 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 BTN3A1O00481 513 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 RHOBTB1O94844 696 aa10.48□□□□□ -0.73
USP54-204ENST00000422491 DNTTP04053 509 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms