RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 INPP5DQ92835 1189 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 GRAMD1AQ96CP6 724 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 VPS39Q96JC1 886 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 ELMO2Q96JJ3 720 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 NRSN2Q9GZP1 204 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 RHOJQ9H4E5 214 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 TFB2MQ9H5Q4 396 aaKnown RBP12.12□□□□□ -0.47
SKA1-203ENST00000417656 TAS2R13Q9NYV9 303 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 KLHL42Q9P2K6 505 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 GSAPA4D1B5 854 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 ARHGEF33A8MVX0 844 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 BTN3A3O00478 584 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PLD2O14939 933 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 KIF1CO43896 1103 aaKnown RBP12.11□□□□□ -0.47
SKA1-203ENST00000417656 BRINP1O60477 761 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 MATN4O95460 622 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 C1orf105O95561 183 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 ACSL3O95573 720 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 ENO3P13929 434 aaPredicted RBP12.11□□□□□ -0.47
SKA1-203ENST00000417656 HOXB1P14653 301 aaPredicted RBP12.11□□□□□ -0.47
SKA1-203ENST00000417656 ITIH1P19827 911 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 SAT1P21673 171 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PKLRP30613 574 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 SHMT2P34897 504 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 GP5P40197 560 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 EIF3IQ13347 325 aaKnown RBP12.11□□□□□ -0.47
SKA1-203ENST00000417656 TRA2AQ13595 282 aaKnown RBP eCLIP12.11□□□□□ -0.47
SKA1-203ENST00000417656 GRB7Q14451 532 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 RTP5Q14D33 572 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 CCSMST1Q4G0I0 132 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.11□□□□□ -0.47
SKA1-203ENST00000417656 UGT3A1Q6NUS8 523 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 ARMC6Q6NXE6 501 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PAQR3Q6TCH7 311 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 NEK10Q6ZWH5 1172 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 CYS1Q717R9 158 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PRSS42Q7Z5A4 293 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 AMIGO1Q86WK6 493 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 RELL1Q8IUW5 271 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 FBXO39Q8N4B4 442 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 EFCAB3Q8N7B9 438 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PPM1NQ8N819 430 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 LINGO1Q96FE5 620 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 FOPNLQ96NB1 174 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 IL17FQ96PD4 163 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 RBBP8Q99708 897 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 CPNE1Q99829 537 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 MCMBPQ9BTE3 642 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 POLR1BQ9H9Y6 1135 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 HRASLS2Q9NWW9 162 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PDP2Q9P2J9 529 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 TXNDC16Q9P2K2 825 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 EPHA6Q9UF33 1036 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 PISDQ9UG56 409 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 POLG2Q9UHN1 485 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 AK5Q9Y6K8 562 aa12.11□□□□□ -0.47
SKA1-203ENST00000417656 HGSO14964 777 aaPredicted RBP12.1□□□□□ -0.47
SKA1-203ENST00000417656 KDM1AO60341 852 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 RASSF9O75901 435 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 FAM155BO75949 473 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ANKRD34CP0C6C1 535 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 JMJD7P0C870 316 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 MPC1LP0DKB6 136 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 CBSLP0DN79 551 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 PHBP35232 272 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 CBSP35520 551 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ETV5P41161 510 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 LSSP48449 732 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 KPNA2P52292 529 aaKnown RBP12.1□□□□□ -0.47
SKA1-203ENST00000417656 CYP4F3Q08477 520 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 PRKAA1Q13131 559 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ZNF460Q14592 562 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 CACHD1Q5VU97 1274 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ARHGAP22Q7Z5H3 698 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 TAX1BP1Q86VP1 789 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ADGRF3Q8IZF5 1079 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 LMNTD1Q8N9Z9 388 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 AGBL5Q8NDL9 886 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 ZDHHC12Q96GR4 267 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 PRR11Q96HE9 360 aaPredicted RBP12.1□□□□□ -0.47
SKA1-203ENST00000417656 PPM1MQ96MI6 270 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 CMKLR1Q99788 373 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 MENTQ9BUN1 341 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 RAB33BQ9H082 229 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 TSPYL1Q9H0U9 437 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 AKAP7Q9P0M2 348 aaPredicted RBP12.1□□□□□ -0.47
SKA1-203ENST00000417656 POMT2Q9UKY4 750 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 VWA7Q9Y334 891 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 FRYQ5TBA9 3013 aa12.1□□□□□ -0.47
SKA1-203ENST00000417656 TLCD2A6NGC4 264 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 EIF3FO00303 357 aaPredicted RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 MATN2O00339 956 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 RASGRF2O14827 1237 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 PSIP1O75475 530 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 TNFSF15O95150 251 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 SLU7O95391 586 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CATP04040 527 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CHRM5P08912 532 aaPredicted RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 FAM153BP0C7A2 387 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 MYBL2P10244 700 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms